I. Summary
SecReT6 ID135 insolico
StrainYersinia pestis Antiqua
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPA_0028 (malG)42926..43816 [-], 891108806026maltose transporter permease 
2YPA_0029 (malF)43830..45407 [-], 1578108806027maltose transporter membrane protein 
3YPA_0030 (malE)45594..46805 [-], 1212108806028maltose ABC transporter periplasmic protein 
4YPA_003147393..47629 [+], 237108806029hypothetical protein 
5YPA_003247633..48742 [+], 1110108806030maltose/maltodextrin transporter ATP-binding protein 
6YPA_0033 (lamB)48813..50084 [+], 1272108806031maltoporin 
7YPA_003450325..51236 [+], 912108806032maltose regulon periplasmic protein 
8YPA_003551575..51985 [+], 411108806033hypothetical protein 
9YPA_003652137..52655 [-], 519108806034hypothetical protein  TssD
10YPA_003753179..53676 [+], 498108806035hypothetical protein  TssB
11YPA_003853744..55225 [+], 1482108806036hypothetical protein  TssC
12YPA_003955232..55672 [+], 441108806037hypothetical protein  TssE
13YPA_004055672..56898 [+], 1227108806038hypothetical protein  TssF
14YPA_004156788..57573 [-], 786108806039transposase for insertion sequence IS1661 
15YPA_004257627..58163 [-], 537108806040insertion element IS1661 DNA-binding protein 
16YPA_0043 (rpsO)58229..58498 [-], 27010880604130S ribosomal protein S15 
17YPA_0044 (truB)58620..59594 [-], 975108806042tRNA pseudouridine synthase B 
18YPA_0045 (rbfA)59594..60004 [-], 411108806043ribosome-binding factor A 
19YPA_0046 (infB)60070..62724 [-], 2655108806044translation initiation factor IF-2 
20YPA_0047 (nusA)62749..64236 [-], 1488108806045transcription elongation factor NusA 
21YPA_004864258..64710 [-], 453108806046hypothetical protein 
22YPA_0049 (secG)65242..65577 [-], 336108806047preprotein translocase subunit SecG 
23YPA_0050 (glmM)65800..67140 [-], 1341108806048phosphoglucosamine mutase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPA_003652137..52655 [-], 519108806034hypothetical protein ECA2866

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Proteins        Genes