I. Summary
SecReT6 ID136 insolico
StrainYersinia pestis Antiqua
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPA_0277322261..323094 [-], 834108806275hypothetical protein 
2YPA_0278323471..324847 [-], 1377108806276hypothetical protein 
3YPA_0279325409..326152 [+], 744108806277quorum-sensing transcriptional regulator 
4YPA_0280326133..326783 [-], 651108806278N-acylhomoserine lactone synthase YspI 
5YPA_0281327958..328608 [+], 651108806279hypothetical protein 
6YPA_0282329059..329454 [+], 396108806280putative lipoprotein 
7YPA_0283329522..329785 [+], 264108806281insertion element protein 
8YPA_0284331730..332230 [+], 501108806282hypothetical protein  TssB
9YPA_0285332279..333817 [+], 1539108806283hypothetical protein  TssC
10YPA_0286333829..335181 [+], 1353108806284hypothetical protein  TssK
11YPA_0287335178..335864 [+], 687108806285hypothetical protein  TssL
12YPA_0288335864..337600 [+], 1737108806286OmpA family membrane protein  TagL
13YPA_0289337604..338095 [+], 492108806287hypothetical protein  TssD
14YPA_0290338513..341161 [+], 2649108806288Clp ATPase  TssH
15YPA_0291341158..343506 [+], 2349108806289hypothetical protein  TssI
16YPA_0292343590..345743 [+], 2154108806290hypothetical protein 
17YPA_0293346640..346915 [+], 276108806291insertion sequence protein 
18YPA_0295346971..347228 [+], 258108806292putative transposase 
19YPA_0296347836..348471 [+], 636108806293hypothetical protein 
20YPA_0297348487..350784 [+], 2298108806294putative kinase 
21YPA_0298350771..351538 [+], 768108806295hypothetical protein 
22YPA_0299351634..351909 [+], 276108806296insertion sequence protein 
23YPA_0300351963..352331 [+], 369108806297insertion sequence protein 
24YPA_0301352939..353574 [+], 636108806298hypothetical protein 
25YPA_0302353658..353906 [+], 249108806299integrase 
26YPA_0303354731..354883 [+], 153108806300hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPA_0289337604..338095 [+], 492108806287hypothetical protein EC042_4529

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Proteins        Genes