I. Summary

SecReT6 ID	137
Strain	Yersinia pestis Antiqua
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_008150
Location	864762..909038
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YPA_0748	860017..861300 [+], 1284	108806745	putative beta-ketoacyl-(acyl-carrier-protein) synthase
2	YPA_0749	861293..862039 [+], 747	108806746	putative beta-ketoacyl-(acyl-carrier-protein) reductase
3	YPA_0750	862055..863293 [+], 1239	108806747	putative hydroxymethylglutaryl-coenzyme A synthase
4	YPA_0751	863286..864005 [+], 720	108806748	enoyl-CoA hydratase
5	YPA_0752	863983..864759 [+], 777	108806749	polyketide biosynthesis enoyl-CoA hydratase
6	YPA_0753	864762..865550 [+], 789	108806750	putative short chain dehydrogenase
7	YPA_0754	865616..866077 [+], 462	108806751	hypothetical protein
8	YPA_0755	866115..866363 [+], 249	108806752	putative acyl carrier protein
9	YPA_0756	866462..867310 [+], 849	108806753	putative acyl transferase
10	YPA_0757	868022..869044 [+], 1023	108806754	transposase for insertion sequence IS100
11	YPA_0758	869044..869823 [+], 780	108806755	transposase/IS protein
12	YPA_0759	870258..870758 [+], 501	108806756	hypothetical protein	TssB
13	YPA_0760	870807..872351 [+], 1545	108806757	hypothetical protein	TssC
14	YPA_0761	872363..873715 [+], 1353	108806758	hypothetical protein	TssK
15	YPA_0762	873712..874398 [+], 687	108806759	hypothetical protein	TssL
16	YPA_0763	874398..876134 [+], 1737	108806760	hypothetical protein	TagL
17	YPA_0764	876138..876629 [+], 492	108806761	hypothetical protein	TssD
18	YPA_0765	877017..879659 [+], 2643	108806762	putative ATPase subunit of ATP-dependent protease	TssH
19	YPA_0766	879662..882010 [+], 2349	108806763	hypothetical protein	TssI
20	YPA_0767	882095..884326 [+], 2232	108806764	hypothetical protein
21	YPA_0768	884323..885096 [+], 774	108806765	hypothetical protein
22	YPA_0769	885250..885510 [+], 261	108806766	hypothetical protein
23	YPA_0770	885526..887709 [+], 2184	108806767	hypothetical protein
24	YPA_0771	887882..888352 [+], 471	108806768	hypothetical protein
25	YPA_0772	888817..888954 [-], 138	108806769	putative transposase
26	YPA_0773	889085..889405 [-], 321	108806770	putative transposase
27	YPA_0774	889514..889687 [-], 174	108806771	IS630 orf
28	YPA_0775	890517..891749 [+], 1233	108806772	hypothetical protein
29	YPA_0776	891746..895168 [+], 3423	108806773	hypothetical protein	TssM
30	YPA_0777	895212..896498 [+], 1287	108806774	hypothetical protein	TssA
31	YPA_0778	896550..896813 [+], 264	108806775	hypothetical protein
32	YPA_0779	896831..897889 [+], 1059	108806776	hypothetical protein	PAAR
33	YPA_0780	897904..898359 [+], 456	108806777	hypothetical protein
34	YPA_0781	898580..900343 [+], 1764	108806778	hypothetical protein	TssF
35	YPA_0782	900307..901392 [+], 1086	108806779	hypothetical protein	TssG
36	YPA_0783	901268..901948 [+], 681	108806780	hypothetical protein	TssJ
37	YPA_0784	901948..902400 [+], 453	108806781	hypothetical protein	TssE
38	YPA_0785	902425..903792 [+], 1368	108806782	hypothetical protein	TssA
39	YPA_0786	904004..904627 [-], 624	108806783	hypothetical protein
40	YPA_0787	905142..906905 [+], 1764	108806784	ABC transporter ATP-binding protein
41	YPA_0788	907133..907786 [+], 654	108806785	hypothetical protein
42	YPA_0789	907830..909038 [-], 1209	108806786	transposase for the IS285 insertion element
43	YPA_0790	909174..909944 [-], 771	108806787	molybdopterin biosynthesis protein MoeB
44	YPA_0791	909946..911220 [-], 1275	108806788	molybdopterin biosynthesis protein MoeA
45	YPA_0792	911755..913065 [-], 1311	108806789	putative heme-binding protein
46	YPA_0793	913075..913743 [-], 669	108806790	ABC transporter ATP-binding protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YPA_0764	876138..876629 [+], 492	108806761	hypothetical protein	EC042_4529

Download FASTA format files

Proteins        Genes

N/A

N/A