I. Summary

SecReT6 ID	138
Strain	Yersinia pestis Antiqua
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_008150
Location	2365311..2407465
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	2	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YPA_2106	2361991..2362485 [-], 495	108808100	cytochrome c-type biogenesis protein CcmE
2	YPA_2107	2362482..2362784 [-], 303	108808101	putative heme exporter protein D
3	YPA_2108	2362781..2363518 [-], 738	108808102	putative heme exporter protein C
4	YPA_2109	2363581..2364240 [-], 660	108808103	heme exporter protein B
5	YPA_2110	2364210..2364866 [-], 657	108808104	cytochrome c biogenesis protein CcmA
6	YPA_2111	2365311..2365778 [-], 468	108808105	hypothetical protein
7	YPA_2112	2366394..2366936 [+], 543	108808106	hypothetical protein
8	YPA_2113	2366881..2368980 [+], 2100	108808107	hypothetical protein
9	YPA_2114	2369356..2369697 [+], 342	108808108	hypothetical protein
10	YPA_2115	2369772..2370137 [-], 366	108808109	hypothetical protein
11	YPA_2116	2370144..2370623 [-], 480	108808110	hypothetical protein	TssE
12	YPA_2117	2370720..2371526 [-], 807	108808111	hypothetical protein	TagJ
13	YPA_2118	2371546..2372394 [-], 849	108808112	hypothetical protein
14	YPA_2119	2372394..2372654 [-], 261	108808113	hypothetical protein	PAAR
15	YPA_2120	2372745..2375591 [-], 2847	108808114	hypothetical protein	TssI
16	YPA_2121	2375885..2379712 [-], 3828	108808115	hypothetical protein	TssM
17	YPA_2122	2379721..2380557 [-], 837	108808116	putative OmpA family protein	TssL
18	YPA_2123	2380573..2381352 [-], 780	108808117	transposase/IS protein
19	YPA_2124	2381352..2382374 [-], 1023	108808118	transposase for insertion sequence IS100
20	YPA_2125	2382388..2383056 [-], 669	108808119	hypothetical protein	TssL
21	YPA_2126	2383053..2384402 [-], 1350	108808120	hypothetical protein	TssK
22	YPA_2127	2384406..2384966 [-], 561	108808121	hypothetical protein	TssJ
23	YPA_2128	2385219..2385788 [-], 570	108808122	hypothetical protein	TssD
24	YPA_2129	2386030..2387532 [-], 1503	108808123	hypothetical protein	TssC
25	YPA_2130	2387556..2388080 [-], 525	108808124	hypothetical protein	TssB
26	YPA_2131	2388185..2388793 [-], 609	108808125	fimbrial protein
27	YPA_2132	2388778..2389968 [-], 1191	108808126	putative outer membrane fimbrial usher porin
28	YPA_2133	2389993..2391201 [+], 1209	108808127	transposase for the IS285 insertion element
29	YPA_2134	2391223..2392773 [-], 1551	108808128	hypothetical protein
30	YPA_2135	2392901..2393662 [-], 762	108808129	putative pili chaperone protein
31	YPA_2136	2393819..2394364 [-], 546	108808130	frimbrial protein
32	YPA_2137	2394565..2397240 [-], 2676	108808131	Clp ATPase	TssH
33	YPA_2138	2398023..2399903 [+], 1881	108808132	hypothetical protein	TssF
34	YPA_2139	2399903..2400928 [+], 1026	108808133	hypothetical protein	TssG
35	YPA_2140	2401027..2402208 [+], 1182	108808134	hypothetical protein	TssA
36	YPA_2141	2402215..2403246 [+], 1032	108808135	putative fimbrial protein
37	YPA_2142	2403286..2404623 [+], 1338	108808136	hypothetical protein
38	YPA_2143	2404569..2405303 [+], 735	108808137	hypothetical protein
39	YPA_2144	2405304..2406986 [+], 1683	108808138	hypothetical protein	TagL
40	YPA_2145	2406983..2407465 [+], 483	108808139	hypothetical protein
41	YPA_2146	2407823..2408425 [-], 603	108808140	LuxR family regulatory protein
42	YPA_2147	2409680..2410774 [-], 1095	108808141	murein hydrolase B
43	YPA_2148	2411103..2412122 [+], 1020	108808142	iron(III)-binding periplasmic protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ROD_27741

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YPA_2128	2385219..2385788 [-], 570	108808122	hypothetical protein	ROD_27741

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Proteins        Genes

N/A

N/A