I. Summary
SecReT6 ID138 insolico
StrainYersinia pestis Antiqua
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPA_21062361991..2362485 [-], 495108808100cytochrome c-type biogenesis protein CcmE 
2YPA_21072362482..2362784 [-], 303108808101putative heme exporter protein D 
3YPA_21082362781..2363518 [-], 738108808102putative heme exporter protein C 
4YPA_21092363581..2364240 [-], 660108808103heme exporter protein B 
5YPA_21102364210..2364866 [-], 657108808104cytochrome c biogenesis protein CcmA 
6YPA_21112365311..2365778 [-], 468108808105hypothetical protein 
7YPA_21122366394..2366936 [+], 543108808106hypothetical protein 
8YPA_21132366881..2368980 [+], 2100108808107hypothetical protein 
9YPA_21142369356..2369697 [+], 342108808108hypothetical protein 
10YPA_21152369772..2370137 [-], 366108808109hypothetical protein 
11YPA_21162370144..2370623 [-], 480108808110hypothetical protein  TssE
12YPA_21172370720..2371526 [-], 807108808111hypothetical protein  TagJ
13YPA_21182371546..2372394 [-], 849108808112hypothetical protein 
14YPA_21192372394..2372654 [-], 261108808113hypothetical protein  PAAR
15YPA_21202372745..2375591 [-], 2847108808114hypothetical protein  TssI
16YPA_21212375885..2379712 [-], 3828108808115hypothetical protein  TssM
17YPA_21222379721..2380557 [-], 837108808116putative OmpA family protein  TssL
18YPA_21232380573..2381352 [-], 780108808117transposase/IS protein 
19YPA_21242381352..2382374 [-], 1023108808118transposase for insertion sequence IS100 
20YPA_21252382388..2383056 [-], 669108808119hypothetical protein  TssL
21YPA_21262383053..2384402 [-], 1350108808120hypothetical protein  TssK
22YPA_21272384406..2384966 [-], 561108808121hypothetical protein  TssJ
23YPA_21282385219..2385788 [-], 570108808122hypothetical protein  TssD
24YPA_21292386030..2387532 [-], 1503108808123hypothetical protein  TssC
25YPA_21302387556..2388080 [-], 525108808124hypothetical protein  TssB
26YPA_21312388185..2388793 [-], 609108808125fimbrial protein 
27YPA_21322388778..2389968 [-], 1191108808126putative outer membrane fimbrial usher porin 
28YPA_21332389993..2391201 [+], 1209108808127transposase for the IS285 insertion element 
29YPA_21342391223..2392773 [-], 1551108808128hypothetical protein 
30YPA_21352392901..2393662 [-], 762108808129putative pili chaperone protein 
31YPA_21362393819..2394364 [-], 546108808130frimbrial protein 
32YPA_21372394565..2397240 [-], 2676108808131Clp ATPase  TssH
33YPA_21382398023..2399903 [+], 1881108808132hypothetical protein  TssF
34YPA_21392399903..2400928 [+], 1026108808133hypothetical protein  TssG
35YPA_21402401027..2402208 [+], 1182108808134hypothetical protein  TssA
36YPA_21412402215..2403246 [+], 1032108808135putative fimbrial protein 
37YPA_21422403286..2404623 [+], 1338108808136hypothetical protein 
38YPA_21432404569..2405303 [+], 735108808137hypothetical protein 
39YPA_21442405304..2406986 [+], 1683108808138hypothetical protein  TagL
40YPA_21452406983..2407465 [+], 483108808139hypothetical protein 
41YPA_21462407823..2408425 [-], 603108808140LuxR family regulatory protein 
42YPA_21472409680..2410774 [-], 1095108808141murein hydrolase B 
43YPA_21482411103..2412122 [+], 1020108808142iron(III)-binding periplasmic protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPA_21282385219..2385788 [-], 570108808122hypothetical protein ROD_27741

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Proteins        Genes