 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PP_RS15950 | 3466349..3466900 [-], 552 | 898330895 | YbhB/YbcL family Raf kinase inhibitor-like protein | |
2 | PP_RS15955 | 3466949..3467257 [-], 309 | 518268253 | hypothetical protein | |
3 | PP_RS15960 | 3467339..3468637 [-], 1299 | 519035062 | MFS transporter | |
4 | PP_RS15965 | 3469064..3469939 [+], 876 | 499256441 | AEC family transporter | |
5 | PP_RS15970 | 3470072..3472489 [-], 2418 | 898330891 | TonB-dependent receptor | |
6 | PP_RS15975 | 3472639..3473601 [-], 963 | 898330889 | FecR domain-containing protein | |
7 | PP_RS15980 | 3473601..3474107 [-], 507 | 499256444 | sigma-70 family RNA polymerase sigma factor | |
8 | PP_RS15985 | 3474196..3476712 [-], 2517 | 499256445 | excinuclease ABC subunit UvrA | |
9 | PP_RS15990 (tssA) | 3476880..3477965 [-], 1086 | 499256446 | type VI secretion system protein TssA | |
10 | PP_RS15995 | 3478061..3478579 [-], 519 | 898330886 | type VI secretion system tube protein Hcp | |
11 | PP_RS16000 (tssM) | 3478723..3481218 [-], 2496 | 499256448 | type VI secretion system membrane subunit TssM | |
12 | PP_RS16005 (tagF) | 3481215..3482123 [-], 909 | 898330884 | type VI secretion system-associated protein TagF | |
13 | PP_RS16010 | 3482120..3485923 [-], 3804 | 499256449 | hypothetical protein | |
14 | PP_RS16015 (icmH) | 3485954..3486670 [-], 717 | 499256450 | type IVB secretion system protein IcmH/DotU | |
15 | PP_RS16020 (tssK) | 3486667..3488010 [-], 1344 | 499256451 | type VI secretion system baseplate subunit TssK | |
16 | PP_RS16025 (tssJ) | 3488007..3488729 [-], 723 | 490713868 | type VI secretion system lipoprotein TssJ | |
17 | PP_RS16030 (tssH) | 3488754..3491351 [-], 2598 | 898330880 | type VI secretion system ATPase TssH | |
18 | PP_RS16035 (tssG) | 3491348..3492418 [-], 1071 | 489341176 | type VI secretion system baseplate subunit TssG | |
19 | PP_RS16040 (tssF) | 3492382..3494202 [-], 1821 | 499256453 | type VI secretion system baseplate subunit TssF | |
20 | PP_RS16045 (tssE) | 3494202..3494684 [-], 483 | 489341181 | type VI secretion system baseplate subunit TssE | |
21 | PP_RS16050 (tssC) | 3494711..3496213 [-], 1503 | 489341182 | type VI secretion system contractile sheath large subunit | |
22 | PP_RS16055 (tssB) | 3496228..3496767 [-], 540 | 898331645 | type VI secretion system contractile sheath small subunit | |
23 | PP_RS16060 | 3496832..3497581 [-], 750 | 898330878 | hypothetical protein | |
24 | PP_RS16065 | 3498302..3498853 [-], 552 | 489341191 | hypothetical protein | |
25 | PP_RS16070 | 3499064..3499783 [+], 720 | pseudogene | ADP-ribosylglycohydrolase family protein | |
26 | PP_RS16075 | 3500053..3500325 [-], 273 | 1002826534 | hypothetical protein | |
27 | PP_RS28435 | 3500335..3500803 [-], 469 | pseudogene | hypothetical protein | |
28 | PP_RS16085 | 3501267..3501455 [+], 189 | pseudogene | type VI secretion system tip protein VgrG | |
29 | PP_RS16090 | 3501614..3502312 [+], 699 | 489341205 | hypothetical protein | |
30 | PP_RS16095 | 3502346..3502605 [+], 260 | pseudogene | hypothetical protein | |
31 | PP_RS28395 | 3502579..3502684 [-], 106 | pseudogene | hypothetical protein | |
32 | PP_RS16105 | 3502704..3503015 [-], 312 | 898330871 | hypothetical protein | |
33 | PP_RS16110 | 3503425..3503814 [-], 390 | 1160888979 | reverse transcriptase | |
34 | PP_RS16115 | 3503869..3504185 [-], 317 | pseudogene | hypothetical protein | |
35 | PP_RS16120 | 3504275..3504571 [-], 297 | 499256456 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein