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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | H16_B2405 | 2714370..2714726 [-], 357 | 116696341 | putative monooxygenase | |
2 | H16_B2406 (cypX) | 2714754..2715878 [-], 1125 | 116696342 | putative cytochrome P450 | |
3 | H16_B2407 (acrB10) | 2716034..2719210 [-], 3177 | 116696343 | cation/multidrug efflux pump | |
4 | H16_B2408 (acrA10) | 2719224..2720498 [-], 1275 | 116696344 | cation/multidrug efflux system, mebrane-fusion component | |
5 | H16_B2409 (acrC10) | 2720515..2721786 [-], 1272 | 116696345 | cation/multidrug efflux system outer membrane porin | |
6 | H16_B2410 (acrD) | 2721884..2722258 [-], 375 | 116696346 | cation efflux system periplasmic protein | |
7 | H16_B2411 | 2722544..2722888 [+], 345 | 116696347 | hypothetical protein | |
8 | H16_B2412 | 2722941..2723147 [-], 207 | 116696348 | hypothetical protein | |
9 | H16_B2413 (rpoE6) | 2723190..2723783 [-], 594 | 116696349 | RNA polymerase sigma factor | |
10 | H16_B2414 | 2723870..2725033 [-], 1164 | 116696350 | hypothetical protein | |
11 | H16_B2415 | 2725094..2726179 [-], 1086 | 116696351 | hypothetical protein | TssA |
12 | H16_B2416 (icmF) | 2726176..2730294 [-], 4119 | 116696352 | IcmF-like protein | TssM |
13 | H16_B2417 | 2730332..2731084 [-], 753 | 116696353 | hypothetical protein | TssL |
14 | H16_B2418 | 2731111..2732439 [-], 1329 | 116696354 | hypothetical protein | TssK |
15 | H16_B2419 | 2732485..2732988 [-], 504 | 116696355 | hypothetical protein | |
16 | H16_B2420 (gltP4) | 2733018..2734472 [-], 1455 | 116696356 | proton/sodium-dicarboxylate symporter | |
17 | H16_B2421 (racX) | 2734469..2735191 [-], 723 | 116696357 | aspartate racemase | |
18 | H16_B2422 (gltP3) | 2735203..2736537 [-], 1335 | 116696358 | proton/sodium-dicarboxylate symporter | |
19 | H16_B2423 | 2736534..2737283 [-], 750 | 116696359 | periplasmic solute binding protein | |
20 | H16_B2424 | 2737527..2737787 [-], 261 | 116696360 | hypothetical protein | |
21 | H16_B2425 | 2737805..2738191 [-], 387 | 116696361 | hypothetical protein | |
22 | H16_B2426 | 2738194..2738856 [-], 663 | 116696362 | hypothetical protein | |
23 | H16_B2427 | 2738915..2740816 [-], 1902 | 116696363 | hypothetical protein | TssI |
24 | H16_B2428 (clpB2) | 2740820..2743540 [-], 2721 | 116696364 | ATP-dependent protease Clp, ATPase subunit | TssH |
25 | H16_B2429 | 2743552..2744598 [-], 1047 | 116696365 | quinoprotein dehydrogenase | TssG |
26 | H16_B2430 | 2744553..2746328 [-], 1776 | 116696366 | hypothetical protein | TssF |
27 | H16_B2431 | 2746321..2746776 [-], 456 | 116696367 | hypothetical protein | TssE |
28 | H16_B2432 | 2746789..2747313 [-], 525 | 116696368 | hypothetical protein | TssD |
29 | H16_B2433 | 2747374..2748885 [-], 1512 | 116696369 | hypothetical protein | TssC |
30 | H16_B2434 | 2748949..2749485 [-], 537 | 116696370 | hypothetical protein | TssB |
31 | H16_B2435 | 2750276..2750995 [+], 720 | 116696371 | response regulator | |
32 | H16_B2436 | 2751281..2751637 [+], 357 | 116696372 | hypothetical protein | |
33 | H16_B2437 | 2751899..2752792 [+], 894 | 116696373 | LysR family transcriptional regulator | |
34 | H16_B2438 | 2752996..2754228 [+], 1233 | 116696374 | acyl-CoA transferase/carnitine dehydratase | |
35 | H16_B2439 | 2754334..2755311 [+], 978 | 116696375 | extra-cytoplasmic solute receptor | |
36 | H16_B2440 (hyuAB) | 2755733..2759461 [+], 3729 | 116696376 | hydantoinase/oxoprolinase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein