I. Summary
SecReT6 ID145 insolico
StrainAlkalilimnicola ehrlichii MLHE-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Mlg_004143278..46577 [-], 3300114319206hypothetical protein 
2Mlg_004246574..47473 [-], 900114319207hypothetical protein 
3Mlg_004347470..48432 [-], 963114319208Rhs element Vgr protein  TssI
4Mlg_004549079..49588 [+], 510114319209hypothetical protein  TssB
5Mlg_004649623..51101 [+], 1479114319210hypothetical protein  TssC
6Mlg_004751108..51536 [+], 429114319211hypothetical protein  TssE
7Mlg_004851556..53319 [+], 1764114319212hypothetical protein  TssF
8Mlg_004953316..54302 [+], 987114319213hypothetical protein  TssG
9Mlg_005054307..55017 [+], 711114319214FHA domain-containing protein  Fha
10Mlg_005155014..55586 [+], 573114319215hypothetical protein  TssJ
11Mlg_005255586..56923 [+], 1338114319216hypothetical protein  TssK
12Mlg_005356926..57741 [+], 816114319217hypothetical protein  TssL
13Mlg_005457738..59315 [+], 1578114319218Fis family transcriptional regulator 
14Mlg_005559312..59959 [+], 648114319219hypothetical protein 
15Mlg_005659947..61389 [+], 1443114319220ImpA domain-containing protein  TssA
16Mlg_005761425..65042 [+], 3618114319221ImcF domain-containing protein  TssM
17Mlg_005865285..65803 [+], 519114319222hypothetical protein  TssD
18Mlg_005965890..66189 [+], 300114319223PAAR repeat-containing protein  PAAR
19Mlg_006066332..66931 [+], 600114319224hypothetical protein 
20Mlg_0061 (dapF)67016..67855 [+], 840114319225diaminopimelate epimerase 
21Mlg_006267913..68611 [+], 699114319226hypothetical protein 
22Mlg_006368618..69532 [+], 915114319227tyrosine recombinase XerC 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Mlg_005865285..65803 [+], 519114319222hypothetical protein ECA2866

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Proteins        Genes