I. Summary
SecReT6 ID146 insolico
StrainShewanella frigidimarina NCIMB 400
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Sfri_23562806787..2807731 [-], 945114563526hypothetical protein 
2Sfri_23572807728..2808828 [-], 1101114563527hypothetical protein 
3Sfri_23582808850..2809140 [-], 291114563528PAAR repeat-containing protein  PAAR
4Sfri_23592809183..2809536 [-], 354114563529hypothetical protein 
5Sfri_23602809539..2811395 [-], 1857114563530Rhs element Vgr protein  TssI
6Sfri_23612811466..2811945 [-], 480114563531hypothetical protein  TssD
7Sfri_23622812315..2814921 [-], 2607114563532ATPase  TssH
8Sfri_23632814941..2815948 [-], 1008114563533hypothetical protein  TssG
9Sfri_23642815945..2817774 [-], 1830114563534hypothetical protein  TssF
10Sfri_23652817771..2818235 [-], 465114563535hypothetical protein  TssE
11Sfri_23662818268..2819056 [-], 789114563536virulence protein, SciE type  TagJ
12Sfri_23672819071..2820606 [-], 1536114563537hypothetical protein  TssC
13Sfri_23682820658..2822151 [-], 1494114563538hypothetical protein  TssC
14Sfri_23692822151..2822651 [-], 501114563539hypothetical protein  TssB
15Sfri_23702822693..2823799 [-], 1107114563540ImpA domain-containing protein  TssA
16Sfri_23712824086..2824853 [-], 768114563541protein serine/threonine phosphatase 
17Sfri_23722824844..2825575 [-], 732114563542hypothetical protein 
18Sfri_23732825557..2829105 [-], 3549114563543ImcF domain-containing protein  TssM
19Sfri_23742829129..2830418 [-], 1290114563544OmpA/MotB domain-containing protein  TssL
20Sfri_23752830443..2831771 [-], 1329114563545hypothetical protein  TssK
21Sfri_23762831796..2832266 [-], 471114563546hypothetical protein  TssJ
22Sfri_23772832285..2833661 [-], 1377114563547FHA domain-containing protein  Fha
23Sfri_23782833694..2835679 [-], 1986114563548serine/threonine protein kinase 
24Sfri_23792835999..2836490 [+], 492114563549OmpA/MotB domain-containing protein  TagL
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Sfri_23612811466..2811945 [-], 480114563531hypothetical protein VPA1027

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Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation