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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | pRL120452 | 487612..488223 [-], 612 | 116249117 | putative transmembrane protein | |
2 | pRL120453 | 488239..490116 [-], 1878 | 116249118 | putative transcriptional regulatory protein | |
3 | pRL120454 | 490221..490511 [-], 291 | 116249119 | putative transmembrane protein | |
4 | pRL120455 | 490583..491272 [-], 690 | 116249120 | putative isochorismatase family protein | |
5 | pRL120456 | 491368..492300 [-], 933 | 116249121 | putative dioxygenase | |
6 | pRL120457 | 492421..493320 [+], 900 | 116249122 | LysR family transcriptional regulator | |
7 | pRL120458 | 493557..493889 [-], 333 | 116249123 | hypothetical protein | |
8 | pRL120459 | 493892..494557 [-], 666 | 116249124 | hypothetical protein | |
9 | pRL120460 | 494565..494912 [-], 348 | 116249125 | hypothetical protein | |
10 | pRL120461 | 495175..496314 [+], 1140 | 116249126 | putative capsule polysaccharide export protein | |
11 | pRL120462 (impN) | 496311..497225 [-], 915 | 116249127 | putative serine/threonine-protein kinase involved in nitrogen fixation | |
12 | pRL120463 (impM) | 497215..498588 [-], 1374 | 116249128 | putative protein involved in nitrogen fixation | |
13 | pRL120464 (impL) | 498599..502075 [-], 3477 | 116249129 | ImcF family transmembrane protein involved in nitrogen fixation | TssM |
14 | pRL120465 (impK) | 502072..503604 [-], 1533 | 116249130 | putative outer membrane porin involved in nitrogen fixation | TssL |
15 | pRL120466 (impJ) | 503601..504941 [-], 1341 | 116249131 | hypothetical protein | TssK |
16 | pRL120467 (impI) | 504931..506130 [-], 1200 | 116249132 | FHA domain-containing protein | Fha |
17 | pRL120468 (impH) | 506142..507143 [-], 1002 | 116249133 | hypothetical protein | TssG |
18 | pRL120469 (impG) | 507164..508945 [-], 1782 | 116249134 | hypothetical protein | TssF |
19 | pRL120470 (impF) | 508938..509447 [-], 510 | 116249135 | hypothetical protein | TssE |
20 | pRL120471 (impE) | 509440..510270 [-], 831 | 116249136 | putative virulence-island/protein involved in nitrogen fixation | TagJ |
21 | pRL120472 (impD) | 510267..511655 [-], 1389 | 116249137 | hypothetical protein | TssC |
22 | pRL120473 (impC) | 511731..513212 [-], 1482 | 116249138 | putative virulence-island/protein involved in nitrogen fixation | TssC |
23 | pRL120474 (impB) | 513343..513888 [-], 546 | 116249139 | hypothetical protein | TssB |
24 | pRL120475 (impA) | 513925..514917 [-], 993 | 116249140 | hypothetical protein | TssA |
25 | pRL120477 | 517603..518079 [+], 477 | 116249141 | hypothetical protein | TssD |
26 | pRL120478 | 518229..519305 [+], 1077 | 116249142 | putative transmembrane protein | |
27 | pRL120479 | 519351..520244 [+], 894 | 116249143 | hypothetical protein | |
28 | pRL120480 | 520276..522540 [+], 2265 | 116249144 | putative fimbrial operon related protein | TssI |
29 | pRL120481 | 522554..523663 [+], 1110 | 116249145 | hypothetical protein | |
30 | pRL120482 | 523660..525162 [+], 1503 | 116249146 | hypothetical protein | |
31 | pRL120483 | 525159..526274 [+], 1116 | 116249147 | hypothetical protein | |
32 | pRL120484 | 526530..527630 [+], 1101 | 116249148 | hypothetical protein | |
33 | pRL120485 | 527666..528412 [+], 747 | 116249149 | hypothetical protein | |
34 | pRL120486 | 528409..529587 [+], 1179 | 116249150 | hypothetical protein | |
35 | pRL120487 | 529643..531088 [-], 1446 | 116249151 | putative salicylaldehyde dehydrogenase | |
36 | pRL120488 | 531112..531915 [-], 804 | 116249152 | 3-alpha-hydroxysteroid dehydrogenase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein