I. Summary
SecReT6 ID148 insolico
StrainBurkholderia ambifaria AMMD
Repliconchromosome I [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bamb_0369415101..415484 [+], 384115350424hypothetical protein 
2Bamb_0370416125..416580 [+], 456115350425hypothetical protein 
3Bamb_0372418105..418500 [+], 396115350426hypothetical protein 
4Bamb_0373419903..420196 [+], 294115350427hypothetical protein 
5Bamb_0374420594..420902 [+], 309115350428hypothetical protein 
6Bamb_0375420910..421167 [+], 258115350429hypothetical protein 
7Bamb_0376421479..421844 [+], 366115350430hypothetical protein 
8Bamb_0377421936..422718 [-], 783115350431hypothetical protein  TssL
9Bamb_0378422715..424061 [-], 1347115350432hypothetical protein  TssK
10Bamb_0379424166..424774 [-], 609115350433hypothetical protein  TssJ
11Bamb_0380425150..425788 [+], 639115350434hypothetical protein 
12Bamb_0381425833..426348 [+], 516115350435hypothetical protein  TssB
13Bamb_0382426364..427854 [+], 1491115350436hypothetical protein  TssC
14Bamb_0383427925..428428 [+], 504115350437hypothetical protein  TssD
15Bamb_0384428491..428976 [+], 486115350438hypothetical protein  TssE
16Bamb_0385429054..430889 [+], 1836115350439hypothetical protein  TssF
17Bamb_0386430853..431953 [+], 1101115350440hypothetical protein  TssG
18Bamb_0387431997..434666 [+], 2670115350441ATPase  TssH
19Bamb_0388434706..435827 [+], 1122115350442ImpA domain-containing protein  TssA
20Bamb_0389435878..436756 [+], 879115350443hypothetical protein 
21Bamb_0390437020..437535 [-], 516115350444hypothetical protein 
22Bamb_0391437736..438686 [-], 951115350445OmpA/MotB domain-containing protein  TagL
23Bamb_0392438691..439680 [-], 990115350446hypothetical protein 
24Bamb_0393439677..443618 [-], 3942115350447ImcF domain-containing protein  TssM
25Bamb_0394443920..444648 [-], 729115350448peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 
26Bamb_0395444887..445858 [+], 972115350449hypothetical protein 
27Bamb_0396446072..447100 [+], 1029115350450Mg2+ transporter protein, CorA family protein 
28Bamb_0397447234..449402 [-], 2169115350451peptidase M1, membrane alanine aminopeptidase 
29Bamb_0398449552..449764 [-], 213115350452hypothetical protein 
30Bamb_0399450047..450541 [+], 495115350453hypothetical protein 
31Bamb_0400450691..451023 [+], 333115350454hypothetical protein 
32Bamb_0401451163..452296 [+], 1134115350455methyltransferase small 
33Bamb_0402452365..453276 [+], 912115350456hypothetical protein 
34Bamb_0403453344..453955 [-], 612115350457hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
BCAL0343 , BTH_I3225

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bamb_0383427925..428428 [+], 504115350437hypothetical protein BCAL0343
2Bamb_52092244169..2246937 [-], 2769115359953Rhs element Vgr protein BTH_I3225

Download FASTA format files
Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation