I. Summary
SecReT6 ID149 insolico
StrainBurkholderia ambifaria AMMD
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bamb_3458255648..257141 [+], 1494115358208amino acid permease 
2Bamb_3459257185..257928 [-], 744115358209phospholipase/carboxylesterase 
3Bamb_3460258139..258381 [+], 243115358210SpoVT/AbrB domain-containing protein 
4Bamb_3461258378..258785 [+], 408115358211twitching motility protein PilT 
5Bamb_3462259235..261625 [+], 2391115358212CheA signal transduction histidine kinases 
6Bamb_3463261628..262368 [+], 741115358213methyl-accepting chemotaxis sensory transducer 
7Bamb_3464262365..262949 [+], 585115358214hypothetical protein 
8Bamb_3465263027..263929 [+], 903115358215hypothetical protein 
9Bamb_3466263965..264330 [+], 366115358216response regulator receiver protein 
10Bamb_3467264557..265660 [-], 1104115358217ImpA domain-containing protein  TssA
11Bamb_3468265657..266730 [-], 1074115358218hypothetical protein  TssG
12Bamb_3469266730..268619 [-], 1890115358219hypothetical protein  TssF
13Bamb_3470268652..269209 [-], 558115358220hypothetical protein  TssE
14Bamb_3471269202..270053 [-], 852115358221virulence protein, SciE type  TagJ
15Bamb_3472270050..270496 [-], 447115358222hypothetical protein 
16Bamb_3473271254..273947 [+], 2694115358223ATPase  TssH
17Bamb_3474273986..274528 [+], 543115358224hypothetical protein  TssB
18Bamb_3475274556..276049 [+], 1494115358225hypothetical protein  TssC
19Bamb_3476276142..276627 [+], 486115358226hypothetical protein  TssD
20Bamb_3477276714..277220 [+], 507115358227hypothetical protein  TssJ
21Bamb_3478277252..278595 [+], 1344115358228hypothetical protein  TssK
22Bamb_3479278884..281421 [+], 2538115358229Rhs element Vgr protein  TssI
23Bamb_3480281396..282280 [+], 885115358230hypothetical protein 
24Bamb_3481282817..284832 [+], 2016115358231hypothetical protein 
25Bamb_3482284825..285754 [+], 930115358232hypothetical protein 
26Bamb_3483285825..286103 [+], 279115358233PAAR repeat-containing protein  PAAR
27Bamb_3484286100..287398 [+], 1299115358234hypothetical protein  TssL
28Bamb_3485287424..291521 [+], 4098115358235ImcF domain-containing protein  TssM
29Bamb_3486291542..292756 [+], 1215115358236OmpA/MotB domain-containing protein  TssL
30Bamb_3487292778..293659 [-], 882115358237LysR family transcriptional regulator 
31Bamb_3488293790..295199 [+], 1410115358238major facilitator transporter 
32Bamb_3489295318..296112 [+], 795115358239enoyl-CoA hydratase 
33Bamb_3490296261..297382 [-], 1122115358240alanine racemase 
34Bamb_3491297686..298057 [+], 372115358241membrane protein-like protein 
35Bamb_3492298100..299047 [-], 948115358242LysR family transcriptional regulator 
36Bamb_3493299168..302707 [+], 3540115358243ABC transporter 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bamb_3476276142..276627 [+], 486115358226hypothetical protein SciK

Download FASTA format files
Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation