 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PP_RS21100 | 4586132..4587814 [-], 1683 | 499257316 | AMP-binding protein | |
2 | PP_RS21105 | 4588136..4589299 [+], 1164 | 489344165 | isovaleryl-CoA dehydrogenase | |
3 | PP_RS21110 | 4589319..4590926 [+], 1608 | 499257318 | propionyl-CoA carboxylase | |
4 | PP_RS21115 | 4590930..4591745 [+], 816 | 489344168 | gamma-carboxygeranoyl-CoA hydratase | |
5 | PP_RS21120 | 4591742..4593694 [+], 1953 | 499257319 | acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha | |
6 | PP_RS21125 | 4593993..4594697 [-], 705 | 499257320 | helix-turn-helix domain-containing protein | |
7 | PP_RS21130 | 4594785..4595084 [+], 300 | 499257321 | hypothetical protein | |
8 | PP_RS21135 | 4595533..4596048 [+], 516 | 499257322 | DUF4880 domain-containing protein | |
9 | PP_RS21140 (tssM) | 4596182..4599808 [-], 3627 | 499257323 | type VI secretion system membrane subunit TssM | |
10 | PP_RS21145 (tssA) | 4599805..4601271 [-], 1467 | 499257324 | type VI secretion system protein TssA | |
11 | PP_RS21150 (tagO) | 4601259..4601891 [-], 633 | 499257325 | type VI secretion system-associated protein TagO | |
12 | PP_RS21155 (tssB) | 4602166..4602669 [+], 504 | 499257326 | type VI secretion system contractile sheath small subunit | |
13 | PP_RS21160 (tssC) | 4602687..4604174 [+], 1488 | pseudogene | type VI secretion system contractile sheath large subunit | |
14 | PP_RS21165 (tssE) | 4604171..4604581 [+], 411 | 499257327 | type VI secretion system baseplate subunit TssE | |
15 | PP_RS21170 (tssF) | 4604585..4606351 [+], 1767 | 499257328 | type VI secretion system baseplate subunit TssF | |
16 | PP_RS21175 (tssG) | 4606315..4607331 [+], 1017 | 499257329 | type VI secretion system baseplate subunit TssG | |
17 | PP_RS21180 (tssJ) | 4607328..4608125 [+], 798 | 499257330 | type VI secretion system lipoprotein TssJ | |
18 | PP_RS21185 (tssK) | 4608175..4609512 [+], 1338 | 489344200 | type VI secretion system baseplate subunit TssK | |
19 | PP_RS21190 (icmH) | 4609514..4610389 [+], 876 | 916468577 | type IVB secretion system protein IcmH/DotU | |
20 | PP_RS21195 | 4610523..4611038 [+], 516 | 499257332 | Hcp family type VI secretion system effector | |
21 | PP_RS21200 (tssI) | 4611113..4613097 [+], 1985 | pseudogene | type VI secretion system tip protein VgrG | |
22 | PP_RS21205 | 4613145..4613576 [+], 432 | 499257333 | DUF1795 domain-containing protein | |
23 | PP_RS21210 | 4613630..4618222 [+], 4593 | 499257334 | RHS domain-containing protein | |
24 | PP_RS21215 | 4618246..4618731 [+], 486 | 1002826573 | SMI1/KNR4 family protein | |
25 | PP_RS28360 | 4619179..4619610 [+], 432 | 1818426227 | hypothetical protein | |
26 | PP_RS21225 | 4619633..4619913 [+], 281 | pseudogene | transposase | |
27 | PP_RS21230 | 4620991..4621407 [+], 417 | 1002826574 | putative phosphotriesterase | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein