 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PA14_RS17365 (aroC) | 3802844..3803935 [-], 1092 | 489178143 | chorismate synthase | |
2 | PA14_RS17370 | 3804043..3805026 [+], 984 | 489231747 | alpha/beta hydrolase | |
3 | PA14_RS17375 | 3805104..3805883 [+], 780 | 489178139 | hypothetical protein | |
4 | PA14_RS17380 (prmB) | 3805908..3806822 [-], 915 | 489178138 | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | |
5 | PA14_RS17385 | 3806993..3807589 [+], 597 | 489231748 | cysteine hydrolase | |
6 | PA14_RS17390 | 3807762..3808082 [+], 321 | 489231749 | hypothetical protein | |
7 | PA14_RS17395 | 3808139..3808696 [+], 558 | 489231750 | Smr/MutS family protein | |
8 | PA14_RS17400 (folE) | 3808774..3809319 [+], 546 | 489178129 | GTP cyclohydrolase I FolE | |
9 | PA14_RS17405 | 3809384..3809845 [-], 462 | 489178127 | bacteriohemerythrin | |
10 | PA14_RS17410 | 3810092..3810472 [+], 381 | 489201244 | VOC family protein | |
11 | PA14_RS17415 | 3810500..3811489 [-], 990 | 489231751 | serine/threonine protein kinase | Stk1 |
12 | PA14_RS17420 | 3811486..3812214 [-], 729 | 489201246 | serine/threonine-protein phosphatase | Stp1 |
13 | PA14_RS17425 (tssM) | 3812214..3815741 [-], 3528 | 489231752 | type VI secretion system membrane subunit TssM | TssM |
14 | PA14_RS17430 | 3815757..3816626 [-], 870 | 489211559 | type IVB secretion system protein IcmH/DotU | TssL |
15 | PA14_RS17435 (tssK) | 3816629..3817960 [-], 1332 | 489178110 | type VI secretion system baseplate subunit TssK | TssK |
16 | PA14_RS17440 (tssJ) | 3817957..3818463 [-], 507 | 489201247 | type VI secretion system lipoprotein TssJ | TssJ |
17 | PA14_RS17445 (tagH) | 3818469..3819662 [-], 1194 | 489231753 | type VI secretion system-associated FHA domain protein TagH | Fha |
18 | PA14_RS17450 | 3819680..3819820 [-], 141 | 489178104 | hypothetical protein | |
19 | PA14_RS17455 | 3819909..3821420 [-], 1512 | 489231755 | sigma-54-dependent Fis family transcriptional regulator | Sfa2 |
20 | PA14_RS17460 (tssH) | 3821431..3824064 [-], 2634 | 489231757 | type VI secretion system ATPase TssH | TssH |
21 | PA14_RS17465 (tssG) | 3824071..3825078 [-], 1008 | 489231760 | type VI secretion system baseplate subunit TssG | TssG |
22 | PA14_RS17470 (tssF) | 3825042..3826829 [-], 1788 | 489178095 | type VI secretion system baseplate subunit TssF | |
23 | PA14_RS31155 | 3826989..3827156 [-], 168 | pseudogene | PAAR domain-containing protein | |
24 | PA14_RS17475 (tssE) | 3827167..3827574 [-], 408 | 489231763 | type VI secretion system baseplate subunit TssE | TssE |
25 | PA14_RS17480 (tssC) | 3827587..3829062 [-], 1476 | 489178086 | type VI secretion system contractile sheath large subunit | TssC |
26 | PA14_RS17485 (tssB) | 3829090..3829596 [-], 507 | 489178082 | type VI secretion system contractile sheath small subunit | TssB |
27 | PA14_RS17490 (tssA) | 3829632..3831188 [-], 1557 | 489231764 | type VI secretion system protein TssA | TssA |
28 | PA14_RS17495 | 3831886..3832404 [+], 519 | 489173777 | Hcp family type VI secretion system effector | TssD |
29 | PA14_RS17500 | 3832600..3834642 [+], 2043 | 499985991 | type VI secretion system tip protein VgrG | TssI |
30 | PA14_RS17505 | 3834632..3835372 [+], 741 | 489231779 | DUF4123 domain-containing protein | |
31 | PA14_RS17510 | 3835369..3840213 [+], 4845 | 489231781 | RHS repeat protein | RhsP2 (e) |
32 | PA14_RS30650 | 3840223..3840657 [+], 435 | 510933967 | hypothetical protein | |
33 | PA14_RS17515 | 3841020..3841622 [-], 603 | 489188423 | glutathione S-transferase family protein | |
34 | PA14_RS17520 | 3841678..3842844 [-], 1167 | 489231784 | PLP-dependent aminotransferase family protein | |
35 | PA14_RS17525 | 3842926..3843402 [+], 477 | 489188426 | MarR family transcriptional regulator | |
36 | PA14_RS17530 | 3843452..3844087 [-], 636 | 489178063 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein