I. Summary

SecReT6 ID	153
Strain	Candidatus Solibacter usitatus Ellin6076
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_008536
Location	293998..331330
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	2	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Acid_0218	289858..291723 [-], 1866	116619360	malto-oligosyltrehalose trehalohydrolase
2	Acid_0219	291730..293901 [-], 2172	116619361	glycogen debranching protein GlgX
3	Acid_0220	293998..296787 [-], 2790	116619362	malto-oligosyltrehalose synthase
4	Acid_0221	296820..297038 [-], 219	116619363	hypothetical protein
5	Acid_0222	297580..299172 [+], 1593	116619364	serine/threonine protein kinase
6	Acid_0223	299183..302560 [-], 3378	116619365	ImcF domain-containing protein	TssM
7	Acid_0224	302569..303273 [-], 705	116619366	hypothetical protein	TssL
8	Acid_0225	303278..304654 [-], 1377	116619367	hypothetical protein	TssK
9	Acid_0226	304752..306737 [+], 1986	116619368	hypothetical protein
10	Acid_0227	306739..308094 [-], 1356	116619369	hypothetical protein	TssK
11	Acid_0228	308238..309704 [+], 1467	116619370	methyltransferase small
12	Acid_0229	309711..311270 [+], 1560	116619371	methyltransferase small
13	Acid_0230	311287..312777 [-], 1491	116619372	type 12 methyltransferase
14	Acid_0231	312973..313491 [+], 519	116619373	hypothetical protein	TssB
15	Acid_0232	313484..314971 [+], 1488	116619374	hypothetical protein	TssC
16	Acid_0233	315027..315515 [+], 489	116619375	hypothetical protein	TssD
17	Acid_0234	315543..316280 [+], 738	116619376	virulence protein, SciE type	TagJ
18	Acid_0235	316264..318090 [+], 1827	116619377	ImpA domain-containing protein	TssA
19	Acid_0236	318094..318594 [+], 501	116619378	hypothetical protein	TssE
20	Acid_0237	318584..320425 [+], 1842	116619379	hypothetical protein	TssF
21	Acid_0238	320497..321423 [+], 927	116619380	hypothetical protein	TssG
22	Acid_0239	321443..324115 [+], 2673	116619381	ATPase	TssH
23	Acid_0240	324146..326167 [+], 2022	116619382	Rhs element Vgr protein	TssI
24	Acid_0241	326169..326750 [+], 582	116619383	hypothetical protein
25	Acid_0242	326766..327056 [+], 291	116619384	PAAR repeat-containing protein	PAAR
26	Acid_0244	328358..329488 [-], 1131	116619385	4-carboxymuconolactone decarboxylase
27	Acid_0245	329491..330774 [-], 1284	116619386	3-carboxy-cis,cis-muconate cycloisomerase
28	Acid_0246	330782..331330 [-], 549	116619387	protocatechuate 3,4-dioxygenase subunit alpha
29	Acid_0247	331327..332031 [-], 705	116619388	protocatechuate 3,4-dioxygenase subunit beta
30	Acid_0248	332028..332807 [-], 780	116619389	coenzyme A transferase
31	Acid_0249	332804..333622 [-], 819	116619390	coenzyme A transferase
32	Acid_0250	333705..334481 [+], 777	116619391	IclR family transcriptional regulator
33	Acid_0251	334542..335735 [+], 1194	116619392	beta-ketoadipyl CoA thiolase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

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