 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Acid_0218 | 289858..291723 [-], 1866 | 116619360 | malto-oligosyltrehalose trehalohydrolase | |
2 | Acid_0219 | 291730..293901 [-], 2172 | 116619361 | glycogen debranching protein GlgX | |
3 | Acid_0220 | 293998..296787 [-], 2790 | 116619362 | malto-oligosyltrehalose synthase | |
4 | Acid_0221 | 296820..297038 [-], 219 | 116619363 | hypothetical protein | |
5 | Acid_0222 | 297580..299172 [+], 1593 | 116619364 | serine/threonine protein kinase | |
6 | Acid_0223 | 299183..302560 [-], 3378 | 116619365 | ImcF domain-containing protein | TssM |
7 | Acid_0224 | 302569..303273 [-], 705 | 116619366 | hypothetical protein | TssL |
8 | Acid_0225 | 303278..304654 [-], 1377 | 116619367 | hypothetical protein | TssK |
9 | Acid_0226 | 304752..306737 [+], 1986 | 116619368 | hypothetical protein | |
10 | Acid_0227 | 306739..308094 [-], 1356 | 116619369 | hypothetical protein | TssK |
11 | Acid_0228 | 308238..309704 [+], 1467 | 116619370 | methyltransferase small | |
12 | Acid_0229 | 309711..311270 [+], 1560 | 116619371 | methyltransferase small | |
13 | Acid_0230 | 311287..312777 [-], 1491 | 116619372 | type 12 methyltransferase | |
14 | Acid_0231 | 312973..313491 [+], 519 | 116619373 | hypothetical protein | TssB |
15 | Acid_0232 | 313484..314971 [+], 1488 | 116619374 | hypothetical protein | TssC |
16 | Acid_0233 | 315027..315515 [+], 489 | 116619375 | hypothetical protein | TssD |
17 | Acid_0234 | 315543..316280 [+], 738 | 116619376 | virulence protein, SciE type | TagJ |
18 | Acid_0235 | 316264..318090 [+], 1827 | 116619377 | ImpA domain-containing protein | TssA |
19 | Acid_0236 | 318094..318594 [+], 501 | 116619378 | hypothetical protein | TssE |
20 | Acid_0237 | 318584..320425 [+], 1842 | 116619379 | hypothetical protein | TssF |
21 | Acid_0238 | 320497..321423 [+], 927 | 116619380 | hypothetical protein | TssG |
22 | Acid_0239 | 321443..324115 [+], 2673 | 116619381 | ATPase | TssH |
23 | Acid_0240 | 324146..326167 [+], 2022 | 116619382 | Rhs element Vgr protein | TssI |
24 | Acid_0241 | 326169..326750 [+], 582 | 116619383 | hypothetical protein | |
25 | Acid_0242 | 326766..327056 [+], 291 | 116619384 | PAAR repeat-containing protein | PAAR |
26 | Acid_0244 | 328358..329488 [-], 1131 | 116619385 | 4-carboxymuconolactone decarboxylase | |
27 | Acid_0245 | 329491..330774 [-], 1284 | 116619386 | 3-carboxy-cis,cis-muconate cycloisomerase | |
28 | Acid_0246 | 330782..331330 [-], 549 | 116619387 | protocatechuate 3,4-dioxygenase subunit alpha | |
29 | Acid_0247 | 331327..332031 [-], 705 | 116619388 | protocatechuate 3,4-dioxygenase subunit beta | |
30 | Acid_0248 | 332028..332807 [-], 780 | 116619389 | coenzyme A transferase | |
31 | Acid_0249 | 332804..333622 [-], 819 | 116619390 | coenzyme A transferase | |
32 | Acid_0250 | 333705..334481 [+], 777 | 116619391 | IclR family transcriptional regulator | |
33 | Acid_0251 | 334542..335735 [+], 1194 | 116619392 | beta-ketoadipyl CoA thiolase | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein