I. Summary
SecReT6 ID153 insolico
StrainCandidatus Solibacter usitatus Ellin6076
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Acid_0218289858..291723 [-], 1866116619360malto-oligosyltrehalose trehalohydrolase 
2Acid_0219291730..293901 [-], 2172116619361glycogen debranching protein GlgX 
3Acid_0220293998..296787 [-], 2790116619362malto-oligosyltrehalose synthase 
4Acid_0221296820..297038 [-], 219116619363hypothetical protein 
5Acid_0222297580..299172 [+], 1593116619364serine/threonine protein kinase 
6Acid_0223299183..302560 [-], 3378116619365ImcF domain-containing protein  TssM
7Acid_0224302569..303273 [-], 705116619366hypothetical protein  TssL
8Acid_0225303278..304654 [-], 1377116619367hypothetical protein  TssK
9Acid_0226304752..306737 [+], 1986116619368hypothetical protein 
10Acid_0227306739..308094 [-], 1356116619369hypothetical protein  TssK
11Acid_0228308238..309704 [+], 1467116619370methyltransferase small 
12Acid_0229309711..311270 [+], 1560116619371methyltransferase small 
13Acid_0230311287..312777 [-], 1491116619372type 12 methyltransferase 
14Acid_0231312973..313491 [+], 519116619373hypothetical protein  TssB
15Acid_0232313484..314971 [+], 1488116619374hypothetical protein  TssC
16Acid_0233315027..315515 [+], 489116619375hypothetical protein  TssD
17Acid_0234315543..316280 [+], 738116619376virulence protein, SciE type  TagJ
18Acid_0235316264..318090 [+], 1827116619377ImpA domain-containing protein  TssA
19Acid_0236318094..318594 [+], 501116619378hypothetical protein  TssE
20Acid_0237318584..320425 [+], 1842116619379hypothetical protein  TssF
21Acid_0238320497..321423 [+], 927116619380hypothetical protein  TssG
22Acid_0239321443..324115 [+], 2673116619381ATPase  TssH
23Acid_0240324146..326167 [+], 2022116619382Rhs element Vgr protein  TssI
24Acid_0241326169..326750 [+], 582116619383hypothetical protein 
25Acid_0242326766..327056 [+], 291116619384PAAR repeat-containing protein  PAAR
26Acid_0244328358..329488 [-], 11311166193854-carboxymuconolactone decarboxylase 
27Acid_0245329491..330774 [-], 12841166193863-carboxy-cis,cis-muconate cycloisomerase 
28Acid_0246330782..331330 [-], 549116619387protocatechuate 3,4-dioxygenase subunit alpha 
29Acid_0247331327..332031 [-], 705116619388protocatechuate 3,4-dioxygenase subunit beta 
30Acid_0248332028..332807 [-], 780116619389coenzyme A transferase 
31Acid_0249332804..333622 [-], 819116619390coenzyme A transferase 
32Acid_0250333705..334481 [+], 777116619391IclR family transcriptional regulator 
33Acid_0251334542..335735 [+], 1194116619392beta-ketoadipyl CoA thiolase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation