I. Summary
SecReT6 ID159 insolico
StrainParacoccus denitrificans PD1222
Repliconchromosome 1 [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Pden_24292433457..2434749 [-], 1293119385156seryl-tRNA synthetase 
2Pden_24302434831..2435190 [-], 360119385157SoxS protein 
3Pden_24312435333..2436346 [+], 1014119385158arginine/ornithine transport system ATPase 
4Pden_24322436330..2436920 [+], 591119385159methylated-DNA--protein-cysteine methyltransferase 
5Pden_2433 (rpmB)2437076..2437351 [+], 27611938516050S ribosomal protein L28 
6Pden_24342437625..2438041 [+], 417119385161hypothetical protein 
7Pden_24352438041..2438394 [+], 354119385162hypothetical protein 
8Pden_24362438382..2439323 [-], 942119385163hypothetical protein 
9Pden_24372439316..2440302 [-], 987119385164hypothetical protein 
10Pden_24382440299..2441363 [-], 10651193851653-oxoacyl-ACP synthase 
11Pden_24392441360..2442460 [-], 1101119385166hypothetical protein 
12Pden_24402442469..2445216 [-], 2748119385167ATPase  TssH
13Pden_24412445389..2447494 [+], 2106119385168protein kinase 
14Pden_24422447625..2448755 [+], 1131119385169ImpA domain-containing protein  TssA
15Pden_24432448813..2449355 [+], 543119385170hypothetical protein  TssB
16Pden_24442449359..2450873 [+], 1515119385171hypothetical protein  TssC
17Pden_24452451018..2451506 [+], 489119385172hypothetical protein  TssD
18Pden_24462451532..2452278 [+], 747119385173hypothetical protein  TssE
19Pden_24472452278..2454140 [+], 1863119385174hypothetical protein  TssF
20Pden_24482454104..2455141 [+], 1038119385175hypothetical protein  TssG
21Pden_24492455141..2456376 [+], 1236119385176FHA domain-containing protein  Fha
22Pden_24502456373..2456846 [+], 474119385177hypothetical protein  TssJ
23Pden_24512456858..2458192 [+], 1335119385178hypothetical protein  TssK
24Pden_24522458202..2459593 [+], 1392119385179OmpA/MotB domain-containing protein  TssL
25Pden_24532459594..2463124 [+], 3531119385180ImcF domain-containing protein  TssM
26Pden_24542463106..2463621 [+], 516119385181hypothetical protein 
27Pden_24552463608..2465959 [-], 2352119385182Rhs element Vgr protein  TssI
28Pden_24562466042..2468447 [-], 2406119385183hypothetical protein  TssM
29Pden_24572468423..2469370 [-], 948119385184hypothetical protein 
30Pden_24582469372..2470148 [-], 777119385185protein phosphatase 2C 
31Pden_24592470233..2470826 [+], 594119385186OmpA/MotB domain-containing protein  TagL
32Pden_24602470943..2472706 [+], 1764119385187polypeptide-transport-associated domain-containing protein 
33Pden_24612472753..2477666 [+], 4914119385188filamentous hemagglutinin 
34Pden_24622477635..2479584 [+], 1950119385189peptidase C14, caspase catalytic subunit p20 
35Pden_24632479845..2480135 [-], 291119385190hypothetical protein 
36Pden_24642480226..2480945 [-], 720119385191hypothetical protein 
37Pden_24652480963..2482648 [-], 1686119385192hemolysin-type calcium-binding protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation