I. Summary
SecReT6 ID160 insolico
StrainAzoarcus sp. BH72
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1azo1291 (sixA)1401860..1402312 [-], 453119897582putative phosphohistidine phosphatase 
2azo12921402375..1403868 [-], 1494119897583adenylate cyclase 
3azo1293 (glnE)1403946..1406627 [-], 2682119897584bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 
4azo12941406776..1410699 [+], 3924119897585hypothetical protein 
5azo12951410696..1411553 [+], 858119897586carbon-nitrogen hydrolase 
6azo1296 (tldD)1411624..1413069 [+], 1446119897587TldD protein 
7azo12971413077..1413520 [-], 444119897588hypothetical protein  TssE
8azo12981413533..1414231 [-], 699119897589hypothetical protein  TssL
9azo12991414245..1415591 [-], 1347119897590hypothetical protein  TssK
10azo13001415603..1416217 [-], 615119897591hypothetical protein  TssJ
11azo13011416388..1417059 [+], 672119897592hypothetical protein 
12azo13021417056..1420748 [+], 3693119897593hypothetical protein  TssM
13azo13031420836..1421360 [+], 525119897594hypothetical protein  TssB
14azo13041421344..1422837 [+], 1494119897595hypothetical protein  TssC
15azo13051422881..1423378 [+], 498119897596hypothetical protein  TssD
16azo13061423378..1423854 [+], 477119897597hypothetical protein  TagL
17azo13071423911..1426628 [+], 2718119897598Vgr related protein  TssI
18azo13081426635..1428473 [+], 1839119897599hypothetical protein  TssF
19azo13091428437..1429453 [+], 1017119897600hypothetical protein  TssG
20azo13101429450..1430565 [-], 1116119897601hypothetical protein  TssA
21azo13111430572..1430835 [-], 264119897602hypothetical protein  PAAR
22azo13121431039..1432133 [+], 1095119897603tRNA (uracil-5-)-methyltransferase 
23azo1313 (phnA)1432168..1432506 [+], 339119897604putative phosphonoacetate hydrolase 
24azo13141432522..1432893 [-], 372119897605hypothetical protein 
25azo13151432952..1433749 [-], 798119897606hypothetical protein 
26azo13161433746..1434351 [-], 606119897607putative ATP binding protein 
27azo13171434635..1435387 [+], 753119897608hypothetical protein 
28azo13181435529..1436443 [-], 915119897609hypothetical protein 
29azo13191436614..1437468 [-], 855119897610putative methyltransferase 
30azo13201437635..1438639 [+], 1005119897611AraC family transcriptional regulator 
31azo13211438850..1439548 [+], 699119897612hypothetical protein 
32azo13221439761..1440165 [+], 405119897613hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Shidore T et al. (2012). Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72. Environ Microbiol. 14(10):2775-87. [PudMed:22616609] experimental in_silico
(2) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation