SecReT6
I. Summary
SecReT6 ID160 insolico
StrainAzoarcus sp. BH72
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_008702
Location1406776..1436443
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AZO_RS065451401860..1402312 [-], 453500089011histidine phosphatase family protein 
2AZO_RS065501402375..1403868 [-], 1494500089012CYTH and CHAD domain-containing protein 
3AZO_RS06555 (glnE)1403946..1406627 [-], 2682500089013bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase 
4AZO_RS065601406776..1410699 [+], 3924500089014TIGR02099 family protein 
5AZO_RS065651410696..1411553 [+], 858500089015carbon-nitrogen hydrolase family protein 
6AZO_RS06570 (tldD)1411624..1413069 [+], 1446500089016metalloprotease TldD 
7AZO_RS06575 (tssE)1413077..1413520 [-], 444500089017type VI secretion system baseplate subunit TssE 
8AZO_RS06580 (icmH)1413533..1414231 [-], 699500089018type IVB secretion system protein IcmH/DotU 
9AZO_RS06585 (tssK)1414245..1415591 [-], 1347500089019type VI secretion system baseplate subunit TssK 
10AZO_RS06590 (tssJ)1415603..1416217 [-], 615500089020type VI secretion system lipoprotein TssJ 
11AZO_RS201351416460..1417059 [+], 600916234535M15 family metallopeptidase 
12AZO_RS066001417056..1420748 [+], 3693500089022hypothetical protein 
13AZO_RS06605 (tssB)1420836..1421360 [+], 525500089023type VI secretion system contractile sheath small subunit 
14AZO_RS06610 (tssC)1421344..1422837 [+], 1494500089024type VI secretion system contractile sheath large subunit 
15AZO_RS066151422881..1423378 [+], 498500089025type VI secretion system tube protein Hcp 
16AZO_RS066201423378..1423854 [+], 477500089026OmpA family protein 
17AZO_RS06625 (tssI)1423911..1426628 [+], 2718500089027type VI secretion system tip protein VgrG 
18AZO_RS06630 (tssF)1426635..1428473 [+], 1839500089028type VI secretion system baseplate subunit TssF 
19AZO_RS06635 (tssG)1428437..1429453 [+], 1017500089029type VI secretion system baseplate subunit TssG 
20AZO_RS06640 (tssA)1429450..1430565 [-], 1116500089030type VI secretion system protein TssA 
21AZO_RS066451430572..1430835 [-], 264500089031PAAR domain-containing protein 
22AZO_RS06650 (trmA)1431039..1432133 [+], 1095500089032tRNA (uridine(54)-C5)-methyltransferase TrmA 
23AZO_RS066551432168..1432506 [+], 339500089033alkylphosphonate utilization protein 
24AZO_RS066601432522..1432893 [-], 372500089034hypothetical protein 
25AZO_RS06665 (fetB)1432952..1433749 [-], 798500089035iron export ABC transporter permease subunit FetB 
26AZO_RS066701433746..1434351 [-], 606500089036ABC transporter ATP-binding protein 
27AZO_RS066751434635..1435387 [+], 753500089037class I SAM-dependent methyltransferase 
28AZO_RS066801435529..1436443 [-], 915500089038Tim44 domain-containing protein 
29AZO_RS066851436614..1437468 [-], 855500089039class I SAM-dependent methyltransferase 
30AZO_RS066901437635..1438639 [+], 1005500089040AraC family transcriptional regulator 
31AZO_RS066951438850..1439570 [+], 721pseudogenephospholipase D family protein 
32AZO_RS207201439758..1440165 [+], 4081729911044hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Shidore T et al. (2012). Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72. Environ Microbiol. 14(10):2775-87. [PudMed:22616609] experimental in_silico
(2) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation