 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | AZO_RS19400 | 4238668..4239555 [-], 888 | 500091575 | transporter | |
2 | AZO_RS19405 | 4239989..4240999 [+], 1011 | 500091576 | thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha | |
3 | AZO_RS19410 | 4241016..4242053 [+], 1038 | 500091577 | alpha-ketoacid dehydrogenase subunit beta | |
4 | AZO_RS19415 | 4242264..4242509 [+], 246 | 500091578 | lipoyl domain-containing protein | |
5 | AZO_RS19420 | 4242513..4243226 [+], 714 | 500091579 | 2-oxo acid dehydrogenase subunit E2 | |
6 | AZO_RS19425 | 4243226..4243996 [+], 771 | 500091580 | lipoate--protein ligase | |
7 | AZO_RS19430 | 4244089..4244643 [+], 555 | 753917945 | twin-arginine translocation signal domain-containing protein | |
8 | AZO_RS19435 | 4244733..4246307 [+], 1575 | 500091582 | GMC family oxidoreductase | |
9 | AZO_RS19440 | 4246369..4246983 [+], 615 | 500091583 | VOC family protein | |
10 | AZO_RS19445 | 4247215..4249182 [+], 1968 | 500091584 | sigma-54-dependent Fis family transcriptional regulator | |
11 | AZO_RS19450 (tssI) | 4249321..4251393 [+], 2073 | 500091585 | type VI secretion system tip protein VgrG | |
12 | AZO_RS19455 | 4251398..4252432 [+], 1035 | 500091586 | DUF2169 domain-containing protein | |
13 | AZO_RS20965 | 4252437..4253474 [+], 1038 | 500091587 | hypothetical protein | |
14 | AZO_RS19465 | 4253497..4254504 [+], 1008 | 500091588 | AHH domain-containing protein | |
15 | AZO_RS20360 | 4254527..4255069 [+], 543 | 500091589 | hypothetical protein | |
16 | AZO_RS19475 | 4255159..4255536 [+], 378 | 500091590 | DUF4150 domain-containing protein | |
17 | AZO_RS19480 | 4255546..4255974 [+], 429 | 500091591 | hypothetical protein | |
18 | AZO_RS19485 | 4255979..4257190 [+], 1212 | 500091592 | hypothetical protein | |
19 | AZO_RS19490 (tagH) | 4257210..4259045 [+], 1836 | 500091593 | type VI secretion system-associated FHA domain protein TagH | |
20 | AZO_RS19495 | 4259097..4259867 [+], 771 | 500091594 | serine/threonine-protein phosphatase | |
21 | AZO_RS19500 | 4260004..4260594 [+], 591 | 753917957 | hypothetical protein | |
22 | AZO_RS19505 | 4260635..4261894 [+], 1260 | 500091596 | hypothetical protein | |
23 | AZO_RS19510 | 4261940..4263946 [-], 2007 | 500091597 | protein kinase | |
24 | AZO_RS19515 (tagF) | 4264005..4264712 [-], 708 | 1789762922 | type VI secretion system-associated protein TagF | |
25 | AZO_RS19520 (tssM) | 4264709..4268281 [-], 3573 | 500091599 | type VI secretion system membrane subunit TssM | |
26 | AZO_RS19525 | 4268313..4269617 [-], 1305 | 500091600 | DotU family type VI secretion system protein | |
27 | AZO_RS19530 (tssK) | 4269682..4271016 [-], 1335 | 500091601 | type VI secretion system baseplate subunit TssK | |
28 | AZO_RS19535 (tssJ) | 4271065..4271583 [-], 519 | 500091602 | type VI secretion system lipoprotein TssJ | |
29 | AZO_RS19540 (tssA) | 4271852..4272913 [+], 1062 | 500091603 | type VI secretion system protein TssA | |
30 | AZO_RS19545 (tssB) | 4272962..4273471 [+], 510 | 500091604 | type VI secretion system contractile sheath small subunit | |
31 | AZO_RS19550 (tssC) | 4273523..4275019 [+], 1497 | 500091605 | type VI secretion system contractile sheath large subunit | |
32 | AZO_RS19555 | 4275148..4275636 [+], 489 | 500091606 | type VI secretion system tube protein Hcp | |
33 | AZO_RS19560 | 4275831..4276337 [+], 507 | 500091607 | type VI secretion system tube protein Hcp | |
34 | AZO_RS19565 | 4276353..4277174 [+], 822 | 500091608 | tetratricopeptide repeat protein | |
35 | AZO_RS19570 (tssE) | 4277194..4277676 [+], 483 | 1948757278 | type VI secretion system baseplate subunit TssE | |
36 | AZO_RS19575 (tssF) | 4277775..4279646 [+], 1872 | 500091610 | type VI secretion system baseplate subunit TssF | |
37 | AZO_RS19580 (tssG) | 4279622..4280665 [+], 1044 | 500091611 | type VI secretion system baseplate subunit TssG | |
38 | AZO_RS19585 (tssH) | 4280714..4283434 [+], 2721 | 500091612 | type VI secretion system ATPase TssH | |
39 | AZO_RS19590 | 4283535..4283924 [+], 390 | 500091613 | hypothetical protein | |
40 | AZO_RS19595 | 4283936..4285093 [+], 1158 | 500091614 | lipase family protein | |
41 | AZO_RS19600 | 4285131..4286267 [+], 1137 | 500091615 | hypothetical protein | |
42 | AZO_RS19605 | 4286286..4287635 [+], 1350 | 500091616 | tetratricopeptide repeat protein | |
43 | AZO_RS19610 | 4287636..4289066 [-], 1431 | 500091617 | serine/threonine protein kinase | |
44 | AZO_RS19615 | 4289077..4289949 [-], 873 | 500091618 | DUF3365 domain-containing protein | |
45 | AZO_RS19620 | 4290002..4290871 [-], 870 | 753915808 | FecR domain-containing protein | |
46 | AZO_RS19625 | 4291053..4292258 [+], 1206 | 500091620 | beta-ketoacyl-[acyl-carrier-protein] synthase family protein | |
47 | AZO_RS19630 | 4292263..4293090 [+], 828 | 500091621 | beta-ketoacyl synthase chain length factor | |
48 | AZO_RS19635 | 4293195..4293596 [+], 402 | 1948757279 | 3-hydroxylacyl-ACP dehydratase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein