 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Ping_0003 (hslU) | 7861..9195 [-], 1335 | 119943797 | ATP-dependent protease ATP-binding subunit HslU | |
2 | Ping_0004 | 9207..9761 [-], 555 | 119943798 | ATP-dependent protease peptidase subunit | |
3 | Ping_0005 (ftsN) | 10064..10597 [-], 534 | 119943799 | cell division protein FtsN | SPOR |
4 | Ping_0006 (argS) | 10601..12349 [-], 1749 | 119943800 | arginyl-tRNA synthetase | |
5 | Ping_0007 | 12572..13027 [-], 456 | 119943801 | hypothetical protein | |
6 | Ping_0008 | 13204..15375 [-], 2172 | 119943802 | UvrD/REP helicase | |
7 | Ping_0009 | 15412..16119 [-], 708 | 119943803 | HAD family hydrolase | |
8 | Ping_0010 | 16153..17052 [-], 900 | 119943804 | tyrosine recombinase XerC | |
9 | Ping_0011 | 17602..18108 [+], 507 | 119943805 | hypothetical protein | TssB |
10 | Ping_0012 | 18217..19665 [+], 1449 | 119943806 | hypothetical protein | TssC |
11 | Ping_0013 | 19699..20217 [+], 519 | 119943807 | secreted protein Hcp, potential oxidative stress protein | TssD |
12 | Ping_0014 | 20228..20935 [+], 708 | 119943808 | hypothetical protein | TssJ |
13 | Ping_0015 | 20951..22315 [+], 1365 | 119943809 | hypothetical protein | TssK |
14 | Ping_0016 | 22319..22966 [+], 648 | 119943810 | hypothetical protein | TssL |
15 | Ping_0017 | 22981..26403 [+], 3423 | 119943811 | hypothetical protein | TssM |
16 | Ping_0018 | 26407..28101 [+], 1695 | 119943812 | hypothetical protein | TssC |
17 | Ping_0019 | 28101..28589 [+], 489 | 119943813 | hypothetical protein | TssD |
18 | Ping_0020 | 28589..28993 [+], 405 | 119943814 | hypothetical protein | TssE |
19 | Ping_0021 | 28993..30762 [+], 1770 | 119943815 | hypothetical protein | TssF |
20 | Ping_0022 | 30759..31712 [+], 954 | 119943816 | hypothetical protein | TssG |
21 | Ping_0023 | 31751..34876 [+], 3126 | 119943817 | Rhs element Vgr protein | TssI |
22 | Ping_0024 | 34893..37742 [+], 2850 | 119943818 | pentapeptide repeat-containing protein | |
23 | Ping_0025 | 37743..38789 [+], 1047 | 119943819 | pentapeptide repeat-containing protein | |
24 | Ping_0026 | 38873..39523 [+], 651 | 119943820 | hypothetical protein | |
25 | Ping_0027 | 39545..39958 [+], 414 | 119943821 | hypothetical protein | |
26 | Ping_0028 | 40134..43757 [+], 3624 | 119943822 | Rhs element Vgr protein | TssI |
27 | Ping_0029 | 43781..46711 [+], 2931 | 119943823 | pentapeptide repeat-containing protein | |
28 | Ping_0030 | 46717..47796 [+], 1080 | 119943824 | pentapeptide repeat-containing protein | |
29 | Ping_0031 | 47840..48484 [+], 645 | 119943825 | hypothetical protein | |
30 | Ping_0032 | 48493..48903 [+], 411 | 119943826 | hypothetical protein | |
31 | Ping_0033 | 48954..50753 [+], 1800 | 119943827 | sensor protein | |
32 | Ping_0034 | 50753..51106 [+], 354 | 119943828 | hypothetical protein | |
33 | Ping_0035 | 51362..53788 [+], 2427 | 119943829 | major facilitator superfamily transporter | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein