I. Summary
SecReT6 ID162 insolico
StrainPsychromonas ingrahamii 37
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Ping_0003 (hslU)7861..9195 [-], 1335119943797ATP-dependent protease ATP-binding subunit HslU 
2Ping_00049207..9761 [-], 555119943798ATP-dependent protease peptidase subunit 
3Ping_0005 (ftsN)10064..10597 [-], 534119943799cell division protein FtsN  SPOR
4Ping_0006 (argS)10601..12349 [-], 1749119943800arginyl-tRNA synthetase 
5Ping_000712572..13027 [-], 456119943801hypothetical protein 
6Ping_000813204..15375 [-], 2172119943802UvrD/REP helicase 
7Ping_000915412..16119 [-], 708119943803HAD family hydrolase 
8Ping_001016153..17052 [-], 900119943804tyrosine recombinase XerC 
9Ping_001117602..18108 [+], 507119943805hypothetical protein  TssB
10Ping_001218217..19665 [+], 1449119943806hypothetical protein  TssC
11Ping_001319699..20217 [+], 519119943807secreted protein Hcp, potential oxidative stress protein  TssD
12Ping_001420228..20935 [+], 708119943808hypothetical protein  TssJ
13Ping_001520951..22315 [+], 1365119943809hypothetical protein  TssK
14Ping_001622319..22966 [+], 648119943810hypothetical protein  TssL
15Ping_001722981..26403 [+], 3423119943811hypothetical protein  TssM
16Ping_001826407..28101 [+], 1695119943812hypothetical protein  TssC
17Ping_001928101..28589 [+], 489119943813hypothetical protein  TssD
18Ping_002028589..28993 [+], 405119943814hypothetical protein  TssE
19Ping_002128993..30762 [+], 1770119943815hypothetical protein  TssF
20Ping_002230759..31712 [+], 954119943816hypothetical protein  TssG
21Ping_002331751..34876 [+], 3126119943817Rhs element Vgr protein  TssI
22Ping_002434893..37742 [+], 2850119943818pentapeptide repeat-containing protein 
23Ping_002537743..38789 [+], 1047119943819pentapeptide repeat-containing protein 
24Ping_002638873..39523 [+], 651119943820hypothetical protein 
25Ping_002739545..39958 [+], 414119943821hypothetical protein 
26Ping_002840134..43757 [+], 3624119943822Rhs element Vgr protein  TssI
27Ping_002943781..46711 [+], 2931119943823pentapeptide repeat-containing protein 
28Ping_003046717..47796 [+], 1080119943824pentapeptide repeat-containing protein 
29Ping_003147840..48484 [+], 645119943825hypothetical protein 
30Ping_003248493..48903 [+], 411119943826hypothetical protein 
31Ping_003348954..50753 [+], 1800119943827sensor protein 
32Ping_003450753..51106 [+], 354119943828hypothetical protein 
33Ping_003551362..53788 [+], 2427119943829major facilitator superfamily transporter 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation