I. Summary

SecReT6 ID	162
Strain	Psychromonas ingrahamii 37
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_008709
Location	12572..48903
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	2	1	2	0	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Ping_0003 (hslU)	7861..9195 [-], 1335	119943797	ATP-dependent protease ATP-binding subunit HslU
2	Ping_0004	9207..9761 [-], 555	119943798	ATP-dependent protease peptidase subunit
3	Ping_0005 (ftsN)	10064..10597 [-], 534	119943799	cell division protein FtsN	SPOR
4	Ping_0006 (argS)	10601..12349 [-], 1749	119943800	arginyl-tRNA synthetase
5	Ping_0007	12572..13027 [-], 456	119943801	hypothetical protein
6	Ping_0008	13204..15375 [-], 2172	119943802	UvrD/REP helicase
7	Ping_0009	15412..16119 [-], 708	119943803	HAD family hydrolase
8	Ping_0010	16153..17052 [-], 900	119943804	tyrosine recombinase XerC
9	Ping_0011	17602..18108 [+], 507	119943805	hypothetical protein	TssB
10	Ping_0012	18217..19665 [+], 1449	119943806	hypothetical protein	TssC
11	Ping_0013	19699..20217 [+], 519	119943807	secreted protein Hcp, potential oxidative stress protein	TssD
12	Ping_0014	20228..20935 [+], 708	119943808	hypothetical protein	TssJ
13	Ping_0015	20951..22315 [+], 1365	119943809	hypothetical protein	TssK
14	Ping_0016	22319..22966 [+], 648	119943810	hypothetical protein	TssL
15	Ping_0017	22981..26403 [+], 3423	119943811	hypothetical protein	TssM
16	Ping_0018	26407..28101 [+], 1695	119943812	hypothetical protein	TssC
17	Ping_0019	28101..28589 [+], 489	119943813	hypothetical protein	TssD
18	Ping_0020	28589..28993 [+], 405	119943814	hypothetical protein	TssE
19	Ping_0021	28993..30762 [+], 1770	119943815	hypothetical protein	TssF
20	Ping_0022	30759..31712 [+], 954	119943816	hypothetical protein	TssG
21	Ping_0023	31751..34876 [+], 3126	119943817	Rhs element Vgr protein	TssI
22	Ping_0024	34893..37742 [+], 2850	119943818	pentapeptide repeat-containing protein
23	Ping_0025	37743..38789 [+], 1047	119943819	pentapeptide repeat-containing protein
24	Ping_0026	38873..39523 [+], 651	119943820	hypothetical protein
25	Ping_0027	39545..39958 [+], 414	119943821	hypothetical protein
26	Ping_0028	40134..43757 [+], 3624	119943822	Rhs element Vgr protein	TssI
27	Ping_0029	43781..46711 [+], 2931	119943823	pentapeptide repeat-containing protein
28	Ping_0030	46717..47796 [+], 1080	119943824	pentapeptide repeat-containing protein
29	Ping_0031	47840..48484 [+], 645	119943825	hypothetical protein
30	Ping_0032	48493..48903 [+], 411	119943826	hypothetical protein
31	Ping_0033	48954..50753 [+], 1800	119943827	sensor protein
32	Ping_0034	50753..51106 [+], 354	119943828	hypothetical protein
33	Ping_0035	51362..53788 [+], 2427	119943829	major facilitator superfamily transporter

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

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