 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | AAVE_RS07265 | 1614190..1615446 [-], 1257 | 500118598 | efflux RND transporter periplasmic adaptor subunit | |
2 | AAVE_RS07270 (hpnC) | 1615609..1616532 [+], 924 | 1174098326 | squalene synthase HpnC | |
3 | AAVE_RS07275 | 1616619..1617287 [-], 669 | 500118600 | hypothetical protein | |
4 | AAVE_RS07280 | 1617808..1618290 [-], 483 | 500118601 | type VI secretion system tube protein Hcp | TssD |
5 | AAVE_RS07285 | 1618859..1620844 [+], 1986 | 500118602 | serine/threonine protein kinase | |
6 | AAVE_RS07290 | 1620951..1621451 [+], 501 | 500118603 | TssQ family T6SS-associated lipoprotein | |
7 | AAVE_RS07295 (tagH) | 1621473..1623806 [+], 2334 | 500118604 | type VI secretion system-associated FHA domain protein TagH | Fha |
8 | AAVE_RS07300 | 1623803..1624591 [+], 789 | 754217893 | serine/threonine-protein phosphatase | |
9 | AAVE_RS07305 (tssJ) | 1624635..1625198 [+], 564 | 500118606 | type VI secretion system lipoprotein TssJ | TssJ |
10 | AAVE_RS07310 (tssK) | 1625240..1626574 [+], 1335 | 500118607 | type VI secretion system baseplate subunit TssK | TssK |
11 | AAVE_RS07315 | 1626589..1627941 [+], 1353 | 1194615205 | DotU family type VI secretion system protein | |
12 | AAVE_RS07320 (tssM) | 1627945..1631574 [+], 3630 | 500118609 | type VI secretion system membrane subunit TssM | TssM |
13 | AAVE_RS07325 (tagF) | 1631574..1632269 [+], 696 | 889861065 | type VI secretion system-associated protein TagF | |
14 | AAVE_RS07330 (tssA) | 1632316..1633356 [+], 1041 | 500118611 | type VI secretion system protein TssA | TssA |
15 | AAVE_RS07335 (tssB) | 1633519..1634067 [+], 549 | 500118612 | type VI secretion system contractile sheath small subunit | TssB |
16 | AAVE_RS07340 (tssC) | 1634081..1635580 [+], 1500 | 500118613 | type VI secretion system contractile sheath large subunit | TssC |
17 | AAVE_RS07345 | 1635702..1636490 [+], 789 | 516008067 | virulence protein SciE type | |
18 | AAVE_RS07350 (tssE) | 1636507..1637028 [+], 522 | 500118615 | type VI secretion system baseplate subunit TssE | TssE |
19 | AAVE_RS07355 (tssF) | 1637101..1638975 [+], 1875 | 500118616 | type VI secretion system baseplate subunit TssF | TssF |
20 | AAVE_RS07360 (tssG) | 1638972..1640138 [+], 1167 | 500118617 | type VI secretion system baseplate subunit TssG | TssG |
21 | AAVE_RS07365 (tssH) | 1640211..1642988 [+], 2778 | 500118618 | type VI secretion system ATPase TssH | TssH |
22 | AAVE_RS07375 | 1643375..1644013 [+], 639 | 500118619 | hypothetical protein | |
23 | AAVE_RS07380 | 1644043..1644546 [+], 504 | 754218589 | M48 family metallopeptidase | |
24 | AAVE_RS07385 | 1644568..1646817 [-], 2250 | 500118621 | xanthine dehydrogenase family protein molybdopterin-binding subunit | |
25 | AAVE_RS07390 | 1646823..1647773 [-], 951 | 500118622 | xanthine dehydrogenase family protein subunit M | |
26 | AAVE_RS07395 (paoA) | 1647777..1648395 [-], 619 | pseudogene | aldehyde dehydrogenase iron-sulfur subunit | |
27 | AAVE_RS07400 (murI) | 1648610..1649500 [-], 891 | 500118623 | glutamate racemase | |
28 | AAVE_RS07405 | 1649597..1651156 [-], 1560 | 500118624 | fumarate hydratase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein