I. Summary
SecReT6 ID164 experimental
StrainAcidovorax citrulli AAC00-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
CommentT6SS plays a role in BFB seed-to-seedling transmission, melon seed colonization and biofilm formation
T6SS TypeType i; subtype i3
experimental Experimental investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Aave_14621614190..1615446 [-], 1257120610149RND family efflux transporter MFP subunit 
2Aave_14631615495..1616532 [+], 1038120610150squalene/phytoene synthase 
3Aave_14641616619..1617287 [-], 669120610151hypothetical protein 
4Aave_14651617808..1618290 [-], 483120610152hypothetical protein  TssD
5Aave_14661618859..1620844 [+], 1986120610153serine/threonine protein kinase 
6Aave_14671620951..1621451 [+], 501120610154hypothetical protein 
7Aave_14681621473..1623806 [+], 2334120610155FHA domain-containing protein  Fha
8Aave_14691623842..1624591 [+], 750120610156protein serine/threonine phosphatase 
9Aave_14701624635..1625198 [+], 564120610157putative lipoprotein  TssJ
10Aave_14711625240..1626574 [+], 1335120610158hypothetical protein  TssK
11Aave_14721626583..1627941 [+], 1359120610159hypothetical protein  TssL
12Aave_14731627945..1631574 [+], 3630120610160ImcF domain-containing protein  TssM
13Aave_14741631556..1632269 [+], 714120610161hypothetical protein 
14Aave_14751632316..1633356 [+], 1041120610162ImpA domain-containing protein  TssA
15Aave_14761633519..1634067 [+], 549120610163hypothetical protein  TssB
16Aave_14771634081..1635580 [+], 1500120610164hypothetical protein  TssC
17Aave_14781635633..1636490 [+], 858120610165virulence protein, SciE type  TagJ
18Aave_14791636507..1637028 [+], 522120610166hypothetical protein  TssE
19Aave_14801637101..1638975 [+], 1875120610167hypothetical protein  TssF
20Aave_14811638972..1640138 [+], 1167120610168hypothetical protein  TssG
21Aave_14821640211..1642988 [+], 2778120610169ATPase  TssH
22Aave_14831643375..1644013 [+], 639120610170hypothetical protein 
23Aave_14841644040..1644546 [+], 507120610171hypothetical protein 
24Aave_14851644568..1646817 [-], 2250120610172xanthine dehydrogenase, molybdenum-binding subunit apoprotein 
25Aave_14861646823..1647773 [-], 951120610173molybdopterin dehydrogenase 
26Aave_14881648610..1649500 [-], 891120610174glutamate racemase 
27Aave_14891649597..1651156 [-], 1560120610175fumarase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Aave_15021666961..1667398 [-], 438120610188hypothetical protein BTH_I0068

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Proteins        Genes
(1) Tian Y et al. (2014). The Type VI Protein Secretion System Contributes to Biofilm Formation and Seed-to-Seedling Transmission of Acidovorax citrulli on melon. Mol Plant Pathol. 16(1):38-47. [PudMed:24863458] experimental
(2) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation