I. Summary

SecReT6 ID	168
Strain	Burkholderia mallei SAVP1
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_008784
Location	1550354..1573536
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BMASAVP1_1586	1545677..1545862 [-], 186	121597706	hypothetical protein
2	BMASAVP1_1587	1545890..1547779 [+], 1890	121598122	hypothetical protein
3	BMASAVP1_1588	1547822..1549258 [-], 1437	121597531	FHA domain-containing protein	Fha
4	BMASAVP1_1589	1549313..1549672 [-], 360	121596783	lipoprotein
5	BMASAVP1_1590	1550354..1550872 [+], 519	121597771	lipoprotein	TssJ
6	BMASAVP1_1591	1550869..1552272 [+], 1404	121596990	hypothetical protein	TssK
7	BMASAVP1_1592	1552288..1553604 [+], 1317	121596826	hypothetical protein	TssL
8	BMASAVP1_1593	1553607..1557236 [+], 3630	121596568	lipoprotein	TssM
9	BMASAVP1_1594	1557233..1557757 [+], 525	121597602	hypothetical protein
10	BMASAVP1_1595	1557754..1557906 [+], 153	121596790	hypothetical protein
11	BMASAVP1_1597	1557912..1558148 [+], 237	121596709	hypothetical protein
12	BMASAVP1_1596	1558133..1558360 [-], 228	121597653	hypothetical protein
13	BMASAVP1_1598	1558359..1560947 [+], 2589	121598059	serine/threonine protein kinase
14	BMASAVP1_1599	1561000..1562079 [+], 1080	121596921	hypothetical protein	TssA
15	BMASAVP1_1600	1562142..1562720 [+], 579	121596549	hypothetical protein	TssB
16	BMASAVP1_1601	1562713..1564221 [+], 1509	121597320	hypothetical protein	TssC
17	BMASAVP1_1602	1564281..1564772 [+], 492	121596796	hypothetical protein	TssD
18	BMASAVP1_1603	1564791..1565351 [+], 561	121597728	hypothetical protein	TssE
19	BMASAVP1_1604	1565356..1567227 [+], 1872	121598163	hypothetical protein	TssF
20	BMASAVP1_1605	1567224..1568702 [+], 1479	121597169	hypothetical protein	TssG
21	BMASAVP1_1606	1568681..1571335 [+], 2655	121596799	ATP-dependent Clp protease, ATP-binding subunit ClpB	TssH
22	BMASAVP1_1607	1571332..1573536 [+], 2205	121597925	Rhs element Vgr protein	TssI
23	BMASAVP1_1608	1573611..1574264 [+], 654	121596656	hypothetical protein
24	BMASAVP1_1609	1574206..1575252 [+], 1047	121597339	hypothetical protein
25	BMASAVP1_1610	1575280..1576113 [-], 834	121597189	IS407A, transposase OrfB
26	BMASAVP1_1611	1576137..1576400 [-], 264	121596662	IS407A, transposase OrfA
27	BMASAVP1_1612	1576696..1576968 [+], 273	121596995	transposase, truncated

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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