I. Summary

SecReT6 ID	170
Strain	Halorhodospira halophila SL1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_008789
Location	173471..200898
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Hhal_0148	171127..171723 [-], 597	121996957	cytochrome b561
2	Hhal_0149	171720..173387 [-], 1668	121996958	cytochrome c family protein
3	Hhal_0150	173471..174319 [-], 849	121996959	phosphotransferase domain-containing protein
4	Hhal_0151	174316..176103 [-], 1788	121996960	ABC transporter-like protein
5	Hhal_0152	176256..176696 [+], 441	121996961	glyoxalase/bleomycin resistance protein/dioxygenase
6	Hhal_0153	176702..178519 [+], 1818	121996962	GTP-binding protein TypA
7	Hhal_0154	178516..180465 [-], 1950	121996963	hypothetical protein	TssI
8	Hhal_0155	180465..182525 [-], 2061	121996964	Rhs element Vgr protein	TssI
9	Hhal_0156	182522..183484 [-], 963	121996965	hypothetical protein	TssG
10	Hhal_0157	183469..185166 [-], 1698	121996966	hypothetical protein	TssF
11	Hhal_0158	185144..185581 [-], 438	121996967	hypothetical protein	TssE
12	Hhal_0159	185637..186122 [-], 486	121996968	hypothetical protein	TssD
13	Hhal_0160	186157..187671 [-], 1515	121996969	hypothetical protein	TssC
14	Hhal_0161	187675..188277 [-], 603	121996970	hypothetical protein	TssB
15	Hhal_0162	188287..189783 [-], 1497	121996971	ImpA domain-containing protein	TssA
16	Hhal_0163	189780..193223 [-], 3444	121996972	hypothetical protein	TssM
17	Hhal_0164	193220..193933 [-], 714	121996973	hypothetical protein	TssL
18	Hhal_0165	193930..195282 [-], 1353	121996974	hypothetical protein	TssK
19	Hhal_0166	195284..195907 [-], 624	121996975	hypothetical protein	TssJ
20	Hhal_0167	196185..197807 [+], 1623	121996976	methyl-accepting chemotaxis sensory transducer
21	Hhal_0168	197937..198410 [-], 474	121996977	FKBP-type peptidylprolyl isomerase
22	Hhal_0169	198430..199803 [-], 1374	121996978	hypothetical protein
23	Hhal_0170	199803..200174 [-], 372	121996979	hypothetical protein
24	Hhal_0171	200224..200898 [-], 675	121996980	haloacid dehalogenase
25	Hhal_0172	201045..201860 [+], 816	121996981	TatD-like deoxyribonuclease
26	Hhal_0173	201857..204328 [-], 2472	121996982	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
27	Hhal_0174	204366..205019 [-], 654	121996983	hypothetical protein
28	Hhal_0175	205149..205841 [-], 693	121996984	peptidase, membrane zinc metallopeptidase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation