I. Summary
SecReT6 ID170 insolico
StrainHalorhodospira halophila SL1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Hhal_0148171127..171723 [-], 597121996957cytochrome b561 
2Hhal_0149171720..173387 [-], 1668121996958cytochrome c family protein 
3Hhal_0150173471..174319 [-], 849121996959phosphotransferase domain-containing protein 
4Hhal_0151174316..176103 [-], 1788121996960ABC transporter-like protein 
5Hhal_0152176256..176696 [+], 441121996961glyoxalase/bleomycin resistance protein/dioxygenase 
6Hhal_0153176702..178519 [+], 1818121996962GTP-binding protein TypA 
7Hhal_0154178516..180465 [-], 1950121996963hypothetical protein  TssI
8Hhal_0155180465..182525 [-], 2061121996964Rhs element Vgr protein  TssI
9Hhal_0156182522..183484 [-], 963121996965hypothetical protein  TssG
10Hhal_0157183469..185166 [-], 1698121996966hypothetical protein  TssF
11Hhal_0158185144..185581 [-], 438121996967hypothetical protein  TssE
12Hhal_0159185637..186122 [-], 486121996968hypothetical protein  TssD
13Hhal_0160186157..187671 [-], 1515121996969hypothetical protein  TssC
14Hhal_0161187675..188277 [-], 603121996970hypothetical protein  TssB
15Hhal_0162188287..189783 [-], 1497121996971ImpA domain-containing protein  TssA
16Hhal_0163189780..193223 [-], 3444121996972hypothetical protein  TssM
17Hhal_0164193220..193933 [-], 714121996973hypothetical protein  TssL
18Hhal_0165193930..195282 [-], 1353121996974hypothetical protein  TssK
19Hhal_0166195284..195907 [-], 624121996975hypothetical protein  TssJ
20Hhal_0167196185..197807 [+], 1623121996976methyl-accepting chemotaxis sensory transducer 
21Hhal_0168197937..198410 [-], 474121996977FKBP-type peptidylprolyl isomerase 
22Hhal_0169198430..199803 [-], 1374121996978hypothetical protein 
23Hhal_0170199803..200174 [-], 372121996979hypothetical protein 
24Hhal_0171200224..200898 [-], 675121996980haloacid dehalogenase 
25Hhal_0172201045..201860 [+], 816121996981TatD-like deoxyribonuclease 
26Hhal_0173201857..204328 [-], 2472121996982PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 
27Hhal_0174204366..205019 [-], 654121996983hypothetical protein 
28Hhal_0175205149..205841 [-], 693121996984peptidase, membrane zinc metallopeptidase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation