I. Summary

SecReT6 ID	171
Strain	Yersinia enterocolitica subsp. enterocolitica 8081
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_008800
Location	2903500..2942053
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YE2674	2899520..2900692 [+], 1173	123442890	hypothetical protein
2	YE2675	2900763..2901524 [-], 762	123442891	DeoR family regulatory protein
3	YE2676	2901629..2902438 [-], 810	123442892	putative haloacid dehalogenase-like hydrolase
4	YE2677	2902618..2903457 [-], 840	123442893	hypothetical protein
5	YE2678	2903500..2905104 [-], 1605	123442894	putative phosphotransferase system protein
6	YE2679	2905488..2906885 [-], 1398	123442895	hypothetical protein
7	YE2680 (argG)	2907123..2908487 [+], 1365	123442896	argininosuccinate synthase
8	YE2681	2908619..2909098 [-], 480	123442897	hypothetical protein	TssE
9	YE2682	2909098..2909925 [-], 828	123442898	hypothetical protein	TagJ
10	YE2683	2909951..2910793 [-], 843	123442899	hypothetical protein
11	YE2684	2911171..2913885 [-], 2715	123442900	hypothetical protein	TssI
12	YE2685	2914034..2917867 [-], 3834	123442901	hypothetical protein	TssM
13	YE2686	2917876..2919252 [-], 1377	123442902	putative OmpA family protein	TssL
14	YE2687	2919249..2920598 [-], 1350	123442903	hypothetical protein	TssK
15	YE2688	2920602..2921153 [-], 552	123442904	hypothetical protein	TssJ
16	YE2689	2921360..2921845 [-], 486	123442905	hypothetical protein	TssD
17	YE2690	2922177..2923604 [-], 1428	123442906	hypothetical protein	TssC
18	YE2691	2923697..2924221 [-], 525	123442907	hypothetical protein	TssB
19	YE2692	2924326..2924928 [-], 603	123442908	fimbrial protein
20	YE2693	2924913..2927588 [-], 2676	123442909	outer membrane usher protein
21	YE2694	2927692..2928489 [-], 798	123442910	putative pili chaperone protein
22	YE2695	2928597..2929157 [-], 561	123442911	frimbrial protein
23	YE2696 (clpB5)	2929324..2931996 [-], 2673	123442912	Clp ATPase	TssH
24	YE2697	2932716..2934596 [+], 1881	123442913	hypothetical protein	TssF
25	YE2698	2934596..2935621 [+], 1026	123442914	hypothetical protein	TssG
26	YE2699	2935696..2936859 [+], 1164	123442915	hypothetical protein	TssA
27	YE2700	2936866..2937870 [+], 1005	123442916	putative fimbrial protein
28	YE2701	2937909..2939246 [+], 1338	123442917	hypothetical protein
29	YE2702	2939243..2939890 [+], 648	123442918	hypothetical protein
30	YE2703	2939891..2941561 [+], 1671	123442919	hypothetical protein	TagL
31	YE2704	2941568..2942053 [+], 486	123442920	hypothetical protein
32	YE2705	2942187..2942789 [-], 603	123442921	LuxR family regulatory protein
33	YE2707 (cobT)	2944349..2945407 [-], 1059	123442922	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
34	YE2708 (cobC)	2945430..2946062 [-], 633	123442923	alpha-ribazole-5'-phosphate phosphatase
35	YE2709 (cobS)	2946100..2946846 [-], 747	123442924	cobalamin synthase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ROD_27741

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YE2689	2921360..2921845 [-], 486	123442905	hypothetical protein	ROD_27741

Download FASTA format files

Proteins        Genes

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation