I. Summary
SecReT6 ID171 insolico
StrainYersinia enterocolitica subsp. enterocolitica 8081
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YE26742899520..2900692 [+], 1173123442890hypothetical protein 
2YE26752900763..2901524 [-], 762123442891DeoR family regulatory protein 
3YE26762901629..2902438 [-], 810123442892putative haloacid dehalogenase-like hydrolase 
4YE26772902618..2903457 [-], 840123442893hypothetical protein 
5YE26782903500..2905104 [-], 1605123442894putative phosphotransferase system protein 
6YE26792905488..2906885 [-], 1398123442895hypothetical protein 
7YE2680 (argG)2907123..2908487 [+], 1365123442896argininosuccinate synthase 
8YE26812908619..2909098 [-], 480123442897hypothetical protein  TssE
9YE26822909098..2909925 [-], 828123442898hypothetical protein  TagJ
10YE26832909951..2910793 [-], 843123442899hypothetical protein 
11YE26842911171..2913885 [-], 2715123442900hypothetical protein  TssI
12YE26852914034..2917867 [-], 3834123442901hypothetical protein  TssM
13YE26862917876..2919252 [-], 1377123442902putative OmpA family protein  TssL
14YE26872919249..2920598 [-], 1350123442903hypothetical protein  TssK
15YE26882920602..2921153 [-], 552123442904hypothetical protein  TssJ
16YE26892921360..2921845 [-], 486123442905hypothetical protein  TssD
17YE26902922177..2923604 [-], 1428123442906hypothetical protein  TssC
18YE26912923697..2924221 [-], 525123442907hypothetical protein  TssB
19YE26922924326..2924928 [-], 603123442908fimbrial protein 
20YE26932924913..2927588 [-], 2676123442909outer membrane usher protein 
21YE26942927692..2928489 [-], 798123442910putative pili chaperone protein 
22YE26952928597..2929157 [-], 561123442911frimbrial protein 
23YE2696 (clpB5)2929324..2931996 [-], 2673123442912Clp ATPase  TssH
24YE26972932716..2934596 [+], 1881123442913hypothetical protein  TssF
25YE26982934596..2935621 [+], 1026123442914hypothetical protein  TssG
26YE26992935696..2936859 [+], 1164123442915hypothetical protein  TssA
27YE27002936866..2937870 [+], 1005123442916putative fimbrial protein 
28YE27012937909..2939246 [+], 1338123442917hypothetical protein 
29YE27022939243..2939890 [+], 648123442918hypothetical protein 
30YE27032939891..2941561 [+], 1671123442919hypothetical protein  TagL
31YE27042941568..2942053 [+], 486123442920hypothetical protein 
32YE27052942187..2942789 [-], 603123442921LuxR family regulatory protein 
33YE2707 (cobT)2944349..2945407 [-], 1059123442922nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 
34YE2708 (cobC)2945430..2946062 [-], 633123442923alpha-ribazole-5'-phosphate phosphatase 
35YE2709 (cobS)2946100..2946846 [-], 747123442924cobalamin synthase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YE26892921360..2921845 [-], 486123442905hypothetical protein ROD_27741

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Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation