I. Summary
SecReT6 ID172 insolico
StrainBurkholderia mallei NCTC 10229
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10229_0706743151..743276 [-], 126124381942hypothetical protein 
2BMA10229_0707743544..744569 [+], 1026124382515N-acetylmuramoyl-L-alanine amidase 
3BMA10229_0708744857..746077 [+], 1221124381770hypothetical protein 
4BMA10229_0709746329..746580 [-], 252124381272hypothetical protein 
5BMA10229_0710 (bimA)746667..747245 [+], 579124381980intracellular motility protein A 
6BMA10229_0711747325..747702 [+], 378124381486lipoprotein 
7BMA10229_0712748031..749947 [-], 1917124383009hypothetical protein  TssA
8BMA10229_0713 (virG)749938..750675 [-], 738124382415DNA-binding response regulator  VirG
9BMA10229_0714750672..752519 [-], 1848124381226sensor histidine kinase  VirA
10BMA10229_0715752779..753273 [+], 495124381929hypothetical protein  TssB
11BMA10229_0716753270..754796 [+], 1527124383316hypothetical protein  TssC
12BMA10229_0717755016..755525 [+], 510124382870hypothetical protein  TssD
13BMA10229_0718755518..755979 [+], 462124383019hypothetical protein  TssE
14BMA10229_0719756016..757758 [+], 1743124382396hypothetical protein  TssF
15BMA10229_0720757746..758768 [+], 1023124382082hypothetical protein  TssG
16BMA10229_0721758755..761838 [+], 3084124381463ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
17BMA10229_0722761865..764888 [+], 3024124381616Rhs element Vgr protein  TssI
18BMA10229_0723764914..767556 [+], 2643124383147pentapeptide repeat-containing protein 
19BMA10229_0724767574..768638 [+], 1065124381305hypothetical protein 
20BMA10229_0725768758..769396 [+], 639124382880hypothetical protein 
21BMA10229_0726769425..769817 [+], 393124383163hypothetical protein 
22BMA10229_0727769827..770624 [+], 798124382536hypothetical protein  TssJ
23BMA10229_0728770621..772054 [+], 1434124381336hypothetical protein  TssK
24BMA10229_0729772051..772716 [+], 666124383212hypothetical protein  TssL
25BMA10229_0730772728..776696 [+], 3969124381698hypothetical protein  TssM
26BMA10229_0731776674..776838 [+], 165124381265hypothetical protein 
27BMA10229_0732776842..777042 [-], 201124382981hypothetical protein 
28BMA10229_0733777767..778621 [+], 855124382482hypothetical protein  BMAA0729 (e)
29BMA10229_0734778693..778929 [+], 237124381462hypothetical protein 
30BMA10229_0735780309..780572 [+], 264124383226IS407A, transposase OrfA 
31BMA10229_0736780596..781429 [+], 834124381779IS407A, transposase OrfB 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
BMAA0737 , BMAA0729, BMAA0742

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMA10229_0722761865..764888 [+], 3024124381616Rhs element Vgr protein BMAA0737
2BMA10229_0733777767..778621 [+], 855124382482hypothetical protein BMAA0729
3BMA10229_0717755016..755525 [+], 510124382870hypothetical protein BMAA0742

Download FASTA format files
Proteins        Genes