I. Summary

SecReT6 ID	175
Strain	Burkholderia mallei NCTC 10229
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_008835
Location	1813979..1837160
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BMA10229_1771	1809302..1809487 [-], 186	124383154	hypothetical protein
2	BMA10229_1772	1809524..1811404 [+], 1881	124382766	hypothetical protein
3	BMA10229_1773	1811447..1812883 [-], 1437	124383239	FHA domain-containing protein	Fha
4	BMA10229_1774	1812938..1813297 [-], 360	124382780	lipoprotein
5	BMA10229_1775	1813979..1814497 [+], 519	124381695	lipoprotein	TssJ
6	BMA10229_1776	1814494..1815897 [+], 1404	124381238	hypothetical protein	TssK
7	BMA10229_1777	1815913..1817229 [+], 1317	124382978	hypothetical protein	TssL
8	BMA10229_1778	1817232..1820861 [+], 3630	124383096	lipoprotein	TssM
9	BMA10229_1780	1820858..1821763 [+], 906	124382369	hypothetical protein
10	BMA10229_1779	1821748..1821975 [-], 228	124381868	hypothetical protein
11	BMA10229_1781	1821974..1824571 [+], 2598	124381812	serine/threonine protein kinase
12	BMA10229_1782	1824624..1825703 [+], 1080	124382503	hypothetical protein	TssA
13	BMA10229_1783	1825766..1826344 [+], 579	124383307	hypothetical protein	TssB
14	BMA10229_1784	1826337..1827845 [+], 1509	124381251	hypothetical protein	TssC
15	BMA10229_1785	1827905..1828396 [+], 492	124381972	hypothetical protein	TssD
16	BMA10229_1786	1828415..1828975 [+], 561	124382748	hypothetical protein	TssE
17	BMA10229_1787	1828980..1830851 [+], 1872	124382484	hypothetical protein	TssF
18	BMA10229_1788	1830848..1832326 [+], 1479	124382985	hypothetical protein	TssG
19	BMA10229_1789	1832305..1834959 [+], 2655	124381690	ATP-dependent Clp protease, ATP-binding subunit ClpB	TssH
20	BMA10229_1790	1834956..1837160 [+], 2205	124383247	Rhs element Vgr protein	TssI
21	BMA10229_1791	1837235..1837888 [+], 654	124382757	hypothetical protein
22	BMA10229_1792	1837830..1838876 [+], 1047	124381704	hypothetical protein
23	BMA10229_1793	1838904..1839737 [-], 834	124381200	IS407A, transposase OrfB
24	BMA10229_1794	1839761..1840024 [-], 264	124382950	IS407A, transposase OrfA

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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