I. Summary
SecReT6 ID18 insolico
StrainYersinia pestis CO92
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPO09611064254..1064562 [-], 309218928132integrase (partial) 
2YPO09621064586..1065221 [-], 636218928133hypothetical protein 
3YPO0963 (insB)1065829..1066185 [-], 357218928134insertion sequence protein 
4YPO0964 (insA)1066251..1066526 [-], 276218928135insertion sequence protein 
5YPO09651066622..1067371 [-], 750218928136hypothetical protein 
6YPO09661067376..1069673 [-], 2298218928137kinase 
7YPO09671069689..1070324 [-], 636218928138hypothetical protein 
8YPO0967a1070859..1071191 [-], 333218928139insertion sequence protein (partial) 
9YPO0968 (insA)1071245..1071520 [-], 276218928140insertion sequence protein 
10YPO0968a1071907..1072287 [-], 381218928141hypothetical protein 
11YPO09691072398..1074620 [-], 2223218928142hypothetical protein 
12YPO09701074635..1076983 [-], 2349218928143hypothetical protein  TssI
13YPO0971 (clpB3)1076980..1079628 [-], 2649218928144Clp ATPase  TssH
14YPO09731080046..1080537 [-], 492218928145hypothetical protein  TssD
15YPO09741080541..1082277 [-], 1737218928146OmpA family membrane protein  TagL
16YPO09751082277..1082963 [-], 687218928147hypothetical protein  TssL
17YPO09761082960..1084312 [-], 1353218928148hypothetical protein  TssK
18YPO09771084324..1085868 [-], 1545218928149hypothetical protein  TssC
19YPO09781085911..1086411 [-], 501218928150hypothetical protein  TssB
20YPO09801087811..1088155 [-], 345218928151phage protein (partial) 
21YPO0980A (insB)1088261..1088320 [-], 60218928152insertion element protein (partial) 
22YPO0981 (insA)1088356..1088619 [-], 264218928153insertion element protein 
23YPO09821088687..1089082 [-], 396218928154lipoprotein 
24YPO09831089533..1090183 [-], 651218928155hypothetical protein 
25YPO0984 (yspI)1091363..1092013 [+], 651218928156N-acylhomoserine lactone synthase 
26YPO0985 (yspR)1091994..1092737 [-], 744218928157quorum-sensing transcriptional regulator 
27YPO09861093299..1094675 [+], 1377218928158hypothetical protein 
28YPO09871095052..1095885 [+], 834218928159hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPO09731080046..1080537 [-], 492218928145hypothetical protein EC042_4529

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Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation