 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPO_RS05750 | 1064254..1064562 [-], 309 | pseudogene | site-specific integrase | |
2 | YPO_RS05755 | 1064586..1065221 [-], 636 | 488138797 | DUF2345 domain-containing protein | |
3 | YPO_RS05760 | 1065829..1066526 [-], 698 | 1194687962 | IS1 family transposase | |
4 | YPO_RS05765 | 1066622..1067389 [-], 768 | 488138800 | hypothetical protein | |
5 | YPO_RS05770 | 1067376..1069673 [-], 2298 | 488138801 | M23 family metallopeptidase | |
6 | YPO_RS05775 | 1069689..1070324 [-], 636 | 488138802 | DUF2345 domain-containing protein | |
7 | YPO_RS05780 | 1070947..1071520 [-], 574 | pseudogene | IS1 family transposase | |
8 | YPO_RS05785 | 1071549..1071743 [-], 195 | 488144902 | hypothetical protein | |
9 | YPO_RS05790 | 1071907..1072254 [-], 348 | 514845521 | hypothetical protein | |
10 | YPO_RS05795 | 1072398..1074620 [-], 2223 | 488138803 | hydroxyethylthiazole kinase | |
11 | YPO_RS05800 | 1074635..1076983 [-], 2349 | 488138804 | type VI secretion system tip protein VgrG | |
12 | YPO_RS05805 (tssH) | 1076980..1079628 [-], 2649 | 488138805 | type VI secretion system ATPase TssH | |
13 | YPO_RS05810 | 1080046..1080537 [-], 492 | 488138806 | Hcp family type VI secretion system effector | |
14 | YPO_RS05815 | 1080541..1082277 [-], 1737 | 488156841 | OmpA family protein | |
15 | YPO_RS05820 | 1082277..1082963 [-], 687 | 488138807 | type VI secretion system protein TssL, short form | |
16 | YPO_RS05825 (tssK) | 1082960..1084312 [-], 1353 | 488140456 | type VI secretion system baseplate subunit TssK | |
17 | YPO_RS05830 (tssC) | 1084324..1085868 [-], 1545 | 488144688 | type VI secretion system contractile sheath large subunit | |
18 | YPO_RS05835 (tssB) | 1085911..1086411 [-], 501 | 488140454 | type VI secretion system contractile sheath small subunit | |
19 | YPO_RS05840 | 1088261..1088619 [-], 359 | pseudogene | IS1 family transposase | |
20 | YPO_RS05845 | 1088687..1089082 [-], 396 | 488144692 | lipoprotein | |
21 | YPO_RS05850 | 1089533..1090183 [-], 651 | 488144694 | CPBP family intramembrane metalloprotease | |
22 | YPO_RS05855 | 1091363..1092013 [+], 651 | 488144695 | acyl-homoserine-lactone synthase | |
23 | YPO_RS05860 | 1091994..1092737 [-], 744 | 488140447 | LuxR family transcriptional regulator | |
24 | YPO_RS05865 | 1093299..1094675 [+], 1377 | 488140446 | peptidase | |
25 | YPO_RS05870 | 1095052..1095885 [+], 834 | 488140444 | intradiol ring-cleavage dioxygenase | |
26 | YPO_RS05875 | 1096033..1096227 [-], 195 | 488157453 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein