I. Summary

SecReT6 ID	18
Strain	Yersinia pestis CO92
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_003143
Location	1067376..1092013
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	0	1	1	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YPO0961	1064254..1064562 [-], 309	218928132	integrase (partial)
2	YPO0962	1064586..1065221 [-], 636	218928133	hypothetical protein
3	YPO0963 (insB)	1065829..1066185 [-], 357	218928134	insertion sequence protein
4	YPO0964 (insA)	1066251..1066526 [-], 276	218928135	insertion sequence protein
5	YPO0965	1066622..1067371 [-], 750	218928136	hypothetical protein
6	YPO0966	1067376..1069673 [-], 2298	218928137	kinase
7	YPO0967	1069689..1070324 [-], 636	218928138	hypothetical protein
8	YPO0967a	1070859..1071191 [-], 333	218928139	insertion sequence protein (partial)
9	YPO0968 (insA)	1071245..1071520 [-], 276	218928140	insertion sequence protein
10	YPO0968a	1071907..1072287 [-], 381	218928141	hypothetical protein
11	YPO0969	1072398..1074620 [-], 2223	218928142	hypothetical protein
12	YPO0970	1074635..1076983 [-], 2349	218928143	hypothetical protein	TssI
13	YPO0971 (clpB3)	1076980..1079628 [-], 2649	218928144	Clp ATPase	TssH
14	YPO0973	1080046..1080537 [-], 492	218928145	hypothetical protein	TssD
15	YPO0974	1080541..1082277 [-], 1737	218928146	OmpA family membrane protein	TagL
16	YPO0975	1082277..1082963 [-], 687	218928147	hypothetical protein	TssL
17	YPO0976	1082960..1084312 [-], 1353	218928148	hypothetical protein	TssK
18	YPO0977	1084324..1085868 [-], 1545	218928149	hypothetical protein	TssC
19	YPO0978	1085911..1086411 [-], 501	218928150	hypothetical protein	TssB
20	YPO0980	1087811..1088155 [-], 345	218928151	phage protein (partial)
21	YPO0980A (insB)	1088261..1088320 [-], 60	218928152	insertion element protein (partial)
22	YPO0981 (insA)	1088356..1088619 [-], 264	218928153	insertion element protein
23	YPO0982	1088687..1089082 [-], 396	218928154	lipoprotein
24	YPO0983	1089533..1090183 [-], 651	218928155	hypothetical protein
25	YPO0984 (yspI)	1091363..1092013 [+], 651	218928156	N-acylhomoserine lactone synthase
26	YPO0985 (yspR)	1091994..1092737 [-], 744	218928157	quorum-sensing transcriptional regulator
27	YPO0986	1093299..1094675 [+], 1377	218928158	hypothetical protein
28	YPO0987	1095052..1095885 [+], 834	218928159	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YPO0973	1080046..1080537 [-], 492	218928145	hypothetical protein	EC042_4529

Download FASTA format files

Proteins        Genes

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation