I. Summary

SecReT6 ID	183
Strain	Burkholderia pseudomallei 668
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_009075
Location	2802588..2825859
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BURPS668_A2952	2801307..2802572 [-], 1266	126444375	hypothetical protein
2	BURPS668_A2953	2802588..2804792 [-], 2205	126443497	Rhs element Vgr protein	TssI
3	BURPS668_A2954	2804789..2807455 [-], 2667	126442624	putative ATP-dependent Clp protease, ATP-binding subunit ClpB	TssH
4	BURPS668_A2955	2807434..2808900 [-], 1467	126443398	hypothetical protein	TssG
5	BURPS668_A2956	2808897..2810768 [-], 1872	126442987	hypothetical protein	TssF
6	BURPS668_A2957	2810773..2811333 [-], 561	126445460	hypothetical protein	TssE
7	BURPS668_A2958	2811352..2811843 [-], 492	126444537	hypothetical protein	TssD
8	BURPS668_A2959	2811903..2813411 [-], 1509	126443228	hypothetical protein	TssC
9	BURPS668_A2960	2813404..2813982 [-], 579	126442318	hypothetical protein	TssB
10	BURPS668_A2961	2814045..2815124 [-], 1080	126445091	ImpA-like N-terminal family protein	TssA
11	BURPS668_A2962	2815177..2817774 [-], 2598	126443723	protein kinase
12	BURPS668_A2964	2817773..2818000 [+], 228	126442764	hypothetical protein
13	BURPS668_A2963	2817985..2818971 [-], 987	126443670	hypothetical protein
14	BURPS668_A2965	2818977..2822606 [-], 3630	126445166	ImcF-like protein	TssM
15	BURPS668_A2966	2822609..2823925 [-], 1317	126443591	hypothetical protein	TssL
16	BURPS668_A2967	2823941..2825344 [-], 1404	126444080	hypothetical protein	TssK
17	BURPS668_A2968	2825341..2825859 [-], 519	126443135	putative lipoprotein	TssJ
18	BURPS668_A2970	2826541..2826900 [+], 360	126445432	putative lipoprotein
19	BURPS668_A2971	2826955..2828388 [+], 1434	126445261	FHA domain-containing protein	Fha
20	BURPS668_A2972	2828431..2830311 [-], 1881	126444448	hypothetical protein
21	BURPS668_A2973	2830342..2830533 [+], 192	126442721	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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