SecReT6
I. Summary
SecReT6 ID193 insolico
StrainBurkholderia mallei NCTC 10247
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009079
Location2109720..2128014
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1110
11
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10247_A21702104870..2105250 [-], 381126447899hypothetical protein 
2BMA10247_A21712105291..2105950 [-], 660126445896hypothetical protein 
3BMA10247_A21732107211..2109688 [-], 2478126447556pentapeptide repeat-containing protein 
4BMA10247_A21742109720..2112047 [-], 2328126445657Rhs element Vgr protein  TssI
5BMA10247_A21752112119..2113156 [-], 1038262192881ImpA-related N-terminal family protein  TssA
6BMA10247_A21762113219..2114304 [-], 1086126447347SciB protein  TssG
7BMA10247_A21772114304..2116193 [-], 1890126447879hypothetical protein  TssF
8BMA10247_A21782116224..2116805 [-], 582126446180hypothetical protein  TssE
9BMA10247_A21792116792..2117757 [-], 966126447594ImpE/SciE family protein  TagJ
10BMA10247_A21802117754..2118500 [-], 747126447054hypothetical protein 
11BMA10247_A21832121965..2122546 [+], 582126445708hypothetical protein  TssB
12BMA10247_A21842122581..2124080 [+], 1500126447950hypothetical protein  TssC
13BMA10247_A21862124197..2124682 [+], 486126446315hypothetical protein  TssD
14BMA10247_A21852124660..2124776 [-], 117126447074hypothetical protein 
15BMA10247_A2187 (sciN)2124789..2125292 [+], 504126446927SciN protein  TssJ
16BMA10247_A21882125314..2126660 [+], 1347126446378hypothetical protein  TssK
17BMA10247_A21892126749..2128014 [+], 1266126447715hypothetical protein  TssL
18BMA10247_A21922132138..2132368 [+], 231126446185hypothetical protein 
19BMA10247_A21932132684..2132833 [-], 150126447373hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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