I. Summary

SecReT6 ID	193
Strain	Burkholderia mallei NCTC 10247
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_009079
Location	2109720..2128014
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	0

11

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BMA10247_A2170	2104870..2105250 [-], 381	126447899	hypothetical protein
2	BMA10247_A2171	2105291..2105950 [-], 660	126445896	hypothetical protein
3	BMA10247_A2173	2107211..2109688 [-], 2478	126447556	pentapeptide repeat-containing protein
4	BMA10247_A2174	2109720..2112047 [-], 2328	126445657	Rhs element Vgr protein	TssI
5	BMA10247_A2175	2112119..2113156 [-], 1038	262192881	ImpA-related N-terminal family protein	TssA
6	BMA10247_A2176	2113219..2114304 [-], 1086	126447347	SciB protein	TssG
7	BMA10247_A2177	2114304..2116193 [-], 1890	126447879	hypothetical protein	TssF
8	BMA10247_A2178	2116224..2116805 [-], 582	126446180	hypothetical protein	TssE
9	BMA10247_A2179	2116792..2117757 [-], 966	126447594	ImpE/SciE family protein	TagJ
10	BMA10247_A2180	2117754..2118500 [-], 747	126447054	hypothetical protein
11	BMA10247_A2183	2121965..2122546 [+], 582	126445708	hypothetical protein	TssB
12	BMA10247_A2184	2122581..2124080 [+], 1500	126447950	hypothetical protein	TssC
13	BMA10247_A2186	2124197..2124682 [+], 486	126446315	hypothetical protein	TssD
14	BMA10247_A2185	2124660..2124776 [-], 117	126447074	hypothetical protein
15	BMA10247_A2187 (sciN)	2124789..2125292 [+], 504	126446927	SciN protein	TssJ
16	BMA10247_A2188	2125314..2126660 [+], 1347	126446378	hypothetical protein	TssK
17	BMA10247_A2189	2126749..2128014 [+], 1266	126447715	hypothetical protein	TssL
18	BMA10247_A2192	2132138..2132368 [+], 231	126446185	hypothetical protein
19	BMA10247_A2193	2132684..2132833 [-], 150	126447373	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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