SecReT6
I. Summary
SecReT6 ID201 insolico
StrainYersinia pestis Pestoides F
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009381
Location595415..617898
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPDSF_0531591561..592394 [-], 834145597839hypothetical protein 
2YPDSF_0532592771..594129 [-], 1359145597840hypothetical protein 
3YPDSF_0533594691..595434 [+], 744145597841quorum-sensing transcriptional regulator 
4YPDSF_0534595415..596065 [-], 651145597842N-acylhomoserine lactone synthase YspI 
5YPDSF_0535597610..597891 [+], 282145597843membrane protein 
6YPDSF_0536598342..598737 [+], 396145597844putative lipoprotein 
7YPDSF_0537598805..599068 [+], 264145597845insertion element protein 
8YPDSF_0538601013..601513 [+], 501145597846hypothetical protein  TssB
9YPDSF_0539601562..603106 [+], 1545145597847hypothetical protein  TssC
10YPDSF_0540603118..604470 [+], 1353145597848hypothetical protein  TssK
11YPDSF_0541604467..605153 [+], 687145597849membrane protein  TssL
12YPDSF_0542605153..606889 [+], 1737145597850OmpA-family membrane protein  TagL
13YPDSF_0543606866..607351 [-], 486145597851hypothetical protein 
14YPDSF_0544606893..607384 [+], 492145597852hypothetical protein  TssD
15YPDSF_0545607802..610450 [+], 2649145597853Clp ATPase  TssH
16YPDSF_0546610447..612795 [+], 2349145597854Rhs element Vgr protein  TssI
17YPDSF_0547612811..615108 [+], 2298145597855kinase 
18YPDSF_0548615095..615862 [+], 768145597856hypothetical protein 
19YPDSF_0549615958..616233 [+], 276145597857insertion sequence protein 
20YPDSF_0550616287..616655 [+], 369145597858insertion sequence protein 
21YPDSF_0551617263..617898 [+], 636145597859hypothetical protein 
22YPDSF_0553619055..619207 [+], 153145597860hypothetical protein 
23YPDSF_0554619062..621389 [+], 2328145597861ornithine decarboxylase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPDSF_0544606893..607384 [+], 492145597852hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation