 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPDSF_1478 | 1665145..1666407 [+], 1263 | 145598762 | hypothetical protein | |
2 | YPDSF_1479 | 1666409..1667077 [+], 669 | 145598763 | ABC transporter ATP-binding protein | |
3 | YPDSF_1480 | 1667087..1668397 [+], 1311 | 145598764 | heme-binding protein | |
4 | YPDSF_1481 | 1668932..1670206 [+], 1275 | 145598765 | molybdopterin biosynthesis protein MoeA | |
5 | YPDSF_1482 | 1670208..1670978 [+], 771 | 145598766 | molybdopterin biosynthesis protein MoeB | |
6 | YPDSF_1483 | 1671043..1671696 [-], 654 | 145598767 | hypothetical protein | |
7 | YPDSF_1484 | 1671924..1673687 [-], 1764 | 145598768 | ABC transporter ATP-binding protein | |
8 | YPDSF_1485 | 1674202..1674825 [+], 624 | 145598769 | hypothetical protein | |
9 | YPDSF_1486 | 1675037..1676404 [-], 1368 | 145598770 | hypothetical protein | TssA |
10 | YPDSF_1487 | 1676429..1676881 [-], 453 | 145598771 | hypothetical protein | TssE |
11 | YPDSF_1488 | 1676881..1677462 [-], 582 | 145598772 | hypothetical protein | TssJ |
12 | YPDSF_1489 | 1677437..1678522 [-], 1086 | 145598773 | hypothetical protein | TssG |
13 | YPDSF_1490 | 1678486..1680249 [-], 1764 | 145598774 | hypothetical protein | TssF |
14 | YPDSF_1491 | 1680470..1680940 [-], 471 | 145598775 | hypothetical protein | |
15 | YPDSF_1492 | 1680940..1681998 [-], 1059 | 145598776 | hypothetical protein | PAAR |
16 | YPDSF_1493 | 1682016..1683617 [-], 1602 | 145598777 | hypothetical protein | TssA |
17 | YPDSF_1494 | 1683661..1687083 [-], 3423 | 145598778 | hypothetical protein | TssM |
18 | YPDSF_1495 | 1687080..1688312 [-], 1233 | 145598779 | hypothetical protein | |
19 | YPDSF_1496 | 1689142..1689315 [+], 174 | 145598780 | IS630 orf | |
20 | YPDSF_1497 | 1689424..1689744 [+], 321 | 145598781 | transposase | |
21 | YPDSF_1498 | 1689875..1690012 [+], 138 | 145598782 | transposase | |
22 | YPDSF_1499 | 1691120..1693303 [-], 2184 | 145598783 | hypothetical protein | |
23 | YPDSF_1500 | 1693319..1693579 [-], 261 | 145598784 | hypothetical protein | |
24 | YPDSF_1501 | 1693733..1694506 [-], 774 | 145598785 | hypothetical protein | |
25 | YPDSF_1502 | 1694503..1696734 [-], 2232 | 145598786 | hypothetical protein | |
26 | YPDSF_1503 | 1696819..1699167 [-], 2349 | 145598787 | hypothetical protein | TssI |
27 | YPDSF_1504 | 1699170..1701812 [-], 2643 | 145598788 | ATPase subunit of ATP-dependent protease | TssH |
28 | YPDSF_1505 | 1702200..1702691 [-], 492 | 145598789 | hypothetical protein | TssD |
29 | YPDSF_1506 | 1702233..1702718 [+], 486 | 145598790 | hypothetical protein | |
30 | YPDSF_1507 | 1702695..1704431 [-], 1737 | 145598791 | hypothetical protein | TagL |
31 | YPDSF_1508 | 1704431..1705117 [-], 687 | 145598792 | membrane protein | TssL |
32 | YPDSF_1509 | 1705114..1706466 [-], 1353 | 145598793 | hypothetical protein | TssK |
33 | YPDSF_1510 | 1706478..1708022 [-], 1545 | 145598794 | hypothetical protein | TssC |
34 | YPDSF_1511 | 1708071..1708571 [-], 501 | 145598795 | hypothetical protein | TssB |
35 | YPDSF_1512 | 1709560..1710408 [-], 849 | 145598796 | acyl transferase | |
36 | YPDSF_1513 | 1710793..1711281 [-], 489 | 145598797 | hypothetical protein | |
37 | YPDSF_1514 | 1711320..1712108 [-], 789 | 145598798 | short chain dehydrogenase | |
38 | YPDSF_1515 | 1712111..1712887 [-], 777 | 145598799 | polyketide biosynthesis enoyl-CoA hydratase | |
39 | YPDSF_1516 | 1712865..1713584 [-], 720 | 145598800 | enoyl-CoA hydratase | |
40 | YPDSF_1517 | 1713577..1714815 [-], 1239 | 145598801 | putative hydroxymethylglutaryl-coenzyme A synthase | |
41 | YPDSF_1518 | 1714831..1715577 [-], 747 | 145598802 | beta-ketoacyl-(acyl-carrier-protein) reductase | |
42 | YPDSF_1519 | 1715570..1716853 [-], 1284 | 145598803 | beta-ketoacyl-(acyl-carrier-protein) synthase | |
43 | YPDSF_1520 | 1716843..1717367 [-], 525 | 145598804 | (3R)-hydroxymyristoyl-ACP dehydratase | |
44 | YPDSF_1521 | 1717631..1717951 [-], 321 | 145598805 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein