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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPDSF_2022 | 2283057..2283551 [-], 495 | 145599300 | cytochrome c-type biogenesis protein CcmE | |
2 | YPDSF_2023 | 2283548..2283850 [-], 303 | 145599301 | heme exporter protein D | |
3 | YPDSF_2024 | 2283847..2284584 [-], 738 | 145599302 | heme exporter protein C | |
4 | YPDSF_2025 | 2284647..2285306 [-], 660 | 145599303 | heme exporter protein B | |
5 | YPDSF_2026 | 2285276..2285932 [-], 657 | 145599304 | cytochrome c biogenesis protein CcmA | |
6 | YPDSF_2027 | 2286377..2286844 [-], 468 | 145599305 | hypothetical protein | |
7 | YPDSF_2028 | 2287460..2288002 [+], 543 | 145599306 | hypothetical protein | |
8 | YPDSF_2029 | 2287947..2290046 [+], 2100 | 145599307 | membrane protein | |
9 | YPDSF_2030 | 2290422..2290763 [+], 342 | 145599308 | hypothetical protein | |
10 | YPDSF_2031 | 2290838..2291203 [-], 366 | 145599309 | membrane protein | |
11 | YPDSF_2032 | 2291210..2291689 [-], 480 | 145599310 | hypothetical protein | TssE |
12 | YPDSF_2033 | 2291770..2292576 [-], 807 | 145599311 | hypothetical protein | TagJ |
13 | YPDSF_2034 | 2292596..2293444 [-], 849 | 145599312 | hypothetical protein | |
14 | YPDSF_2035 | 2293444..2293704 [-], 261 | 145599313 | hypothetical protein | PAAR |
15 | YPDSF_2036 | 2293803..2296082 [-], 2280 | 145599314 | hypothetical protein | TssI |
16 | YPDSF_2039 | 2300211..2301047 [-], 837 | 145599315 | OmpA family protein | TssL |
17 | YPDSF_2040 | 2301063..2301842 [-], 780 | 145599316 | transposase/IS protein | |
18 | YPDSF_2041 | 2301842..2302864 [-], 1023 | 145599317 | transposase for insertion sequence IS100 | |
19 | YPDSF_2042 | 2302878..2303546 [-], 669 | 145599318 | hypothetical protein | TssL |
20 | YPDSF_2043 | 2303543..2304892 [-], 1350 | 145599319 | hypothetical protein | TssK |
21 | YPDSF_2044 | 2304896..2305456 [-], 561 | 145599320 | hypothetical protein | TssJ |
22 | YPDSF_2045 | 2305709..2306278 [-], 570 | 145599321 | hypothetical protein | TssD |
23 | YPDSF_2046 | 2306520..2308022 [-], 1503 | 145599322 | hypothetical protein | TssC |
24 | YPDSF_2047 | 2308046..2308570 [-], 525 | 145599323 | hypothetical protein | TssB |
25 | YPDSF_2048 | 2308675..2309283 [-], 609 | 145599324 | fimbrial protein | |
26 | YPDSF_2049 | 2309268..2310458 [-], 1191 | 145599325 | outer membrane fimbrial usher porin | |
27 | YPDSF_2050 | 2310483..2311691 [+], 1209 | 145599326 | transposase for the IS285 insertion element | |
28 | YPDSF_2051 | 2311713..2313263 [-], 1551 | 145599327 | hypothetical protein | |
29 | YPDSF_2052 | 2313391..2314152 [-], 762 | 145599328 | pili chaperone protein | |
30 | YPDSF_2053 | 2314309..2314854 [-], 546 | 145599329 | frimbrial protein | |
31 | YPDSF_2054 | 2315055..2317730 [-], 2676 | 145599330 | Clp ATPase | TssH |
32 | YPDSF_2055 | 2318513..2320393 [+], 1881 | 145599331 | hypothetical protein | TssF |
33 | YPDSF_2056 | 2320393..2321238 [+], 846 | 145599332 | hypothetical protein | TssG |
34 | YPDSF_2057 | 2321300..2321413 [+], 114 | 145599333 | hypothetical protein | |
35 | YPDSF_2058 | 2321512..2322693 [+], 1182 | 145599334 | hypothetical protein | TssA |
36 | YPDSF_2059 | 2322700..2323731 [+], 1032 | 145599335 | fimbrial protein | |
37 | YPDSF_2060 | 2323771..2325108 [+], 1338 | 145599336 | hypothetical protein | |
38 | YPDSF_2061 | 2325054..2325806 [+], 753 | 145599337 | hypothetical protein | |
39 | YPDSF_2062 | 2325807..2327489 [+], 1683 | 145599338 | hypothetical protein | TagL |
40 | YPDSF_2063 | 2327486..2327968 [+], 483 | 145599339 | hypothetical protein | |
41 | YPDSF_2064 | 2328326..2328928 [-], 603 | 145599340 | LuxR family regulatory protein | |
42 | YPDSF_2065 | 2330190..2331284 [-], 1095 | 145599341 | murein hydrolase B | |
43 | YPDSF_2066 | 2331613..2332632 [+], 1020 | 145599342 | iron(III)-binding periplasmic protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein