SecReT6
I. Summary
SecReT6 ID203 insolico
StrainYersinia pestis Pestoides F
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009381
Location2286377..2327968
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPDSF_20222283057..2283551 [-], 495145599300cytochrome c-type biogenesis protein CcmE 
2YPDSF_20232283548..2283850 [-], 303145599301heme exporter protein D 
3YPDSF_20242283847..2284584 [-], 738145599302heme exporter protein C 
4YPDSF_20252284647..2285306 [-], 660145599303heme exporter protein B 
5YPDSF_20262285276..2285932 [-], 657145599304cytochrome c biogenesis protein CcmA 
6YPDSF_20272286377..2286844 [-], 468145599305hypothetical protein 
7YPDSF_20282287460..2288002 [+], 543145599306hypothetical protein 
8YPDSF_20292287947..2290046 [+], 2100145599307membrane protein 
9YPDSF_20302290422..2290763 [+], 342145599308hypothetical protein 
10YPDSF_20312290838..2291203 [-], 366145599309membrane protein 
11YPDSF_20322291210..2291689 [-], 480145599310hypothetical protein  TssE
12YPDSF_20332291770..2292576 [-], 807145599311hypothetical protein  TagJ
13YPDSF_20342292596..2293444 [-], 849145599312hypothetical protein 
14YPDSF_20352293444..2293704 [-], 261145599313hypothetical protein  PAAR
15YPDSF_20362293803..2296082 [-], 2280145599314hypothetical protein  TssI
16YPDSF_20392300211..2301047 [-], 837145599315OmpA family protein  TssL
17YPDSF_20402301063..2301842 [-], 780145599316transposase/IS protein 
18YPDSF_20412301842..2302864 [-], 1023145599317transposase for insertion sequence IS100 
19YPDSF_20422302878..2303546 [-], 669145599318hypothetical protein  TssL
20YPDSF_20432303543..2304892 [-], 1350145599319hypothetical protein  TssK
21YPDSF_20442304896..2305456 [-], 561145599320hypothetical protein  TssJ
22YPDSF_20452305709..2306278 [-], 570145599321hypothetical protein  TssD
23YPDSF_20462306520..2308022 [-], 1503145599322hypothetical protein  TssC
24YPDSF_20472308046..2308570 [-], 525145599323hypothetical protein  TssB
25YPDSF_20482308675..2309283 [-], 609145599324fimbrial protein 
26YPDSF_20492309268..2310458 [-], 1191145599325outer membrane fimbrial usher porin 
27YPDSF_20502310483..2311691 [+], 1209145599326transposase for the IS285 insertion element 
28YPDSF_20512311713..2313263 [-], 1551145599327hypothetical protein 
29YPDSF_20522313391..2314152 [-], 762145599328pili chaperone protein 
30YPDSF_20532314309..2314854 [-], 546145599329frimbrial protein 
31YPDSF_20542315055..2317730 [-], 2676145599330Clp ATPase  TssH
32YPDSF_20552318513..2320393 [+], 1881145599331hypothetical protein  TssF
33YPDSF_20562320393..2321238 [+], 846145599332hypothetical protein  TssG
34YPDSF_20572321300..2321413 [+], 114145599333hypothetical protein 
35YPDSF_20582321512..2322693 [+], 1182145599334hypothetical protein  TssA
36YPDSF_20592322700..2323731 [+], 1032145599335fimbrial protein 
37YPDSF_20602323771..2325108 [+], 1338145599336hypothetical protein 
38YPDSF_20612325054..2325806 [+], 753145599337hypothetical protein 
39YPDSF_20622325807..2327489 [+], 1683145599338hypothetical protein  TagL
40YPDSF_20632327486..2327968 [+], 483145599339hypothetical protein 
41YPDSF_20642328326..2328928 [-], 603145599340LuxR family regulatory protein 
42YPDSF_20652330190..2331284 [-], 1095145599341murein hydrolase B 
43YPDSF_20662331613..2332632 [+], 1020145599342iron(III)-binding periplasmic protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPDSF_20452305709..2306278 [-], 570145599321hypothetical protein ROD_27741

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation