SecReT6
I. Summary
SecReT6 ID21 insolico
StrainYersinia pestis CO92
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_003143
Location3272776..3302045
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number110011101
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPO29233269085..3269564 [-], 480218929978tRNA-specific adenosine deaminase 
2YPO2924 (yfhB)3269758..3270405 [-], 648218929979hypothetical protein 
3YPO2925 (murQ)3270680..3271567 [-], 888218929980N-acetylmuramic acid-6-phosphate etherase 
4YPO29263271775..3272614 [+], 840218929981DNA-binding transcriptional regulator 
5YPO2927 (fdx)3272776..3273036 [+], 261218929982[4Fe-4S] ferredoxin 
6YPO2928 (tnp)3273192..3273650 [-], 459218929983transposase for the IS1541 insertion element 
7YPO2929 (acpS)3273852..3274232 [-], 3812189299844'-phosphopantetheinyl transferase 
8YPO2930 (pdxJ)3274232..3274963 [-], 732218929985pyridoxine 5'-phosphate synthase 
9YPO29313275153..3275935 [-], 783218929986transposase/IS protein 
10YPO2932 (y1093)3275932..3276954 [-], 1023218929987transposase for insertion sequence IS100 
11YPO29343277633..3278982 [-], 1350218929988hypothetical protein  TssK
12YPO29353278986..3279546 [-], 561218929989hypothetical protein  TssJ
13YPO29373279799..3280284 [-], 486218929990hypothetical protein  TssD
14YPO29383280610..3282112 [-], 1503218929991hypothetical protein  TssC
15YPO29393282136..3282660 [-], 525218929992hypothetical protein  TssB
16YPO29403282765..3283319 [-], 555218929993fimbrial protein 
17YPO2942 (y1062)3284573..3285781 [+], 1209218929994transposase for the IS285 insertion element 
18YPO29443287481..3288260 [-], 780218929995pili chaperone protein 
19YPO29453288399..3288944 [-], 546218929996frimbrial protein 
20YPO2946 (clpB5)3289145..3291820 [-], 2676218929997Clp ATPase  TssH
21YPO29473292603..3294483 [+], 1881218929998hypothetical protein  TssF
22YPO29483294483..3295508 [+], 1026218929999hypothetical protein  TssG
23YPO29493295607..3296788 [+], 1182218930000hypothetical protein  TssA
24YPO29503296795..3297826 [+], 1032218930001fimbrial protein 
25YPO29513297866..3299203 [+], 1338218930002hypothetical protein 
26YPO29523299200..3299883 [+], 684218930003hypothetical protein 
27YPO29533299884..3301566 [+], 1683218930004hypothetical protein  TagL
28YPO29543301563..3302045 [+], 483218930005hypothetical protein 
29YPO29553302403..3303005 [-], 603218930006LuxR family transcriptional regulator 
30YPO2957 (mltB)3304260..3305372 [-], 1113218930007murein hydrolase B 
31YPO2958 (sfuA)3305683..3306702 [+], 1020218930008iron(III)-binding periplasmic protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPO29373279799..3280284 [-], 486218929990hypothetical protein ROD_27741

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation