SecReT6
I. Summary
SecReT6 ID21 insolico
StrainYersinia pestis CO92
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_003143
Location3272776..3302045
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number110011101
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPO_RS15580 (tadA)3269085..3269687 [-], 603488140355tRNA adenosine(34) deaminase TadA 
2YPO_RS15585 (yfhb)3269758..3270453 [-], 696488140356phosphatidylglycerophosphatase C 
3YPO_RS15590 (murQ)3270680..3271567 [-], 888488140357N-acetylmuramic acid 6-phosphate etherase 
4YPO_RS155953271775..3272614 [+], 840488140358MurR/RpiR family transcriptional regulator 
5YPO_RS156003272776..3273036 [+], 261488140359YfhL family 4Fe-4S dicluster ferredoxin 
6YPO_RS15605 (tnpA)3273192..3273650 [-], 459488142567IS200/IS605-like element IS1541B family transposase 
7YPO_RS156103273852..3274232 [-], 381488140360holo-ACP synthase 
8YPO_RS15615 (pdxJ)3274232..3274963 [-], 732488140361pyridoxine 5'-phosphate synthase 
9YPO_RS15620 (istB)3275153..3275932 [-], 780485651601IS21-like element IS100kyp family helper ATPase IstB 
10YPO_RS15625 (istA)3275932..3276954 [-], 1023446178089IS21-like element IS100 family transposase 
11YPO_RS156303277040..3277636 [-], 597pseudogeneDotU family type IV/VI secretion system protein 
12YPO_RS15635 (tssK)3277633..3278982 [-], 1350488140363type VI secretion system baseplate subunit TssK 
13YPO_RS15640 (tssJ)3278986..3279525 [-], 540488140364type VI secretion system lipoprotein TssJ 
14YPO_RS156453279799..3280284 [-], 486488140365type VI secretion system tube protein Hcp 
15YPO_RS15650 (tssC)3280610..3282112 [-], 1503488140366type VI secretion system contractile sheath large subunit 
16YPO_RS15655 (tssB)3282136..3282660 [-], 525488140367type VI secretion system contractile sheath small subunit 
17YPO_RS156603282765..3283373 [-], 609488140368type 1 fimbrial protein 
18YPO_RS156653283358..3284548 [-], 1191488140369fimbrial biogenesis outer membrane usher protein 
19YPO_RS156703284573..3285781 [+], 1209488138535IS256 family transposase 
20YPO_RS156753285803..3287353 [-], 1551488143949fimbrial biogenesis outer membrane usher protein 
21YPO_RS156803287481..3288242 [-], 762488140371fimbria/pilus periplasmic chaperone 
22YPO_RS156853288399..3288944 [-], 546488140372type 1 fimbrial protein 
23YPO_RS15690 (tssH)3289145..3291820 [-], 2676488144109type VI secretion system ATPase TssH 
24YPO_RS15695 (tssF)3292603..3294483 [+], 1881488140374type VI secretion system baseplate subunit TssF 
25YPO_RS15700 (tssG)3294483..3295508 [+], 1026488140375type VI secretion system baseplate subunit TssG 
26YPO_RS157053295607..3296788 [+], 1182488140376ImpA family type VI secretion system protein 
27YPO_RS157103296795..3297826 [+], 1032488144111fimbrial protein 
28YPO_RS157153297866..3299203 [+], 1338488140378glycosyl transferase 
29YPO_RS157203299200..3299883 [+], 684488140379hypothetical protein 
30YPO_RS157253299884..3301566 [+], 1683488140380OmpA family protein 
31YPO_RS157303301563..3302045 [+], 483488144113DcrB-related protein 
32YPO_RS157353302403..3303005 [-], 603488140382LuxR family transcriptional regulator 
33YPO_RS15740 (mltB)3304260..3305354 [-], 1095488140386lytic murein transglycosylase B 
34YPO_RS157453305683..3306702 [+], 1020488140388iron ABC transporter substrate-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation