I. Summary

SecReT6 ID	211
Strain	Pseudomonas putida F1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_009512
Location	2396601..2414329
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

12

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Pput_2114	2391817..2392695 [-], 879	148547335	hypothetical protein
2	Pput_2115	2392698..2395688 [-], 2991	148547336	hypothetical protein
3	Pput_2116	2395681..2396604 [-], 924	148547337	hypothetical protein
4	Pput_2117	2396601..2398769 [-], 2169	148547338	Rhs element Vgr protein	TssI
5	Pput_2118	2398843..2399358 [-], 516	148547339	hypothetical protein	TssD
6	Pput_2119	2399491..2400360 [-], 870	148547340	hypothetical protein	TssL
7	Pput_2120	2400362..2401699 [-], 1338	148547341	hypothetical protein	TssK
8	Pput_2121	2401755..2402552 [-], 798	148547342	hypothetical protein	TssJ
9	Pput_2122	2402549..2403118 [-], 570	148547343	FHA domain-containing protein	Fha
10	Pput_2123	2403115..2404131 [-], 1017	148547344	hypothetical protein	TssG
11	Pput_2124	2404095..2405861 [-], 1767	148547345	hypothetical protein	TssF
12	Pput_2125	2405865..2406275 [-], 411	148547346	GPW/gp25 family protein	TssE
13	Pput_2126	2406272..2407762 [-], 1491	148547347	hypothetical protein	TssC
14	Pput_2127	2407780..2408283 [-], 504	148547348	hypothetical protein	TssB
15	Pput_2128	2408611..2409261 [+], 651	148547349	hypothetical protein
16	Pput_2129	2409249..2410712 [+], 1464	148547350	ImpA domain-containing protein	TssA
17	Pput_2130	2410709..2414329 [+], 3621	148547351	ImcF domain-containing protein	TssM
18	Pput_2131	2414407..2416260 [-], 1854	148547352	ABC transporter-like protein	TagT
19	Pput_2132	2416563..2418053 [+], 1491	148547353	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ECA2866

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	Pput_2118	2398843..2399358 [-], 516	148547339	hypothetical protein	ECA2866

Download FASTA format files

Proteins        Genes

N/A

(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537]

This literature contains bioinformatics investigation