SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	220
Strain	Yersinia pseudotuberculosis IP 31758
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_009708
Location	361901..399776
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YpsIP31758_0307	357135..357350 [-], 216	153949675	hypothetical protein
2	YpsIP31758_0308 (malK2)	357396..358505 [+], 1110	153949249	maltose/maltodextrin transporter ATP-binding protein
3	YpsIP31758_0309 (lamB)	358576..359847 [+], 1272	153949490	maltoporin
4	YpsIP31758_0310 (malM)	360088..360999 [+], 912	153947065	maltose regulon periplasmic protein
5	YpsIP31758_0311	361733..361849 [-], 117	153950439	hypothetical protein
6	YpsIP31758_0312	361901..362419 [-], 519	153948422	hypothetical protein	TssD
7	YpsIP31758_0313	362943..363440 [+], 498	153947969	hypothetical protein	TssB
8	YpsIP31758_0314	363508..364989 [+], 1482	153949851	hypothetical protein	TssC
9	YpsIP31758_0315	364996..365436 [+], 441	153949284	hypothetical protein	TssE
10	YpsIP31758_0316	365436..367256 [+], 1821	153947194	hypothetical protein	TssF
11	YpsIP31758_0317	367277..368308 [+], 1032	153950860	hypothetical protein	TssG
12	YpsIP31758_0318	368434..369750 [+], 1317	153947604	FHA domain-containing protein	Fha
13	YpsIP31758_0319	369750..370295 [+], 546	153948365	lipoprotein	TssJ
14	YpsIP31758_0320	370298..371644 [+], 1347	153947118	hypothetical protein	TssK
15	YpsIP31758_0321	371644..372411 [+], 768	153947590	hypothetical protein	TssL
16	YpsIP31758_0322 (clpV2)	372422..375025 [+], 2604	153950295	type VI secretion ATPase	TssH
17	YpsIP31758_0323	375022..375819 [+], 798	153950691	Fis family transcriptional regulator
18	YpsIP31758_0324	375816..376502 [+], 687	153948416	hypothetical protein
19	YpsIP31758_0325	376508..377896 [+], 1389	153949756	ImpA domain-containing protein	TssA
20	YpsIP31758_0326	377928..381461 [+], 3534	153947566	lipoprotein	TssM
21	YpsIP31758_0327	381613..382926 [+], 1314	153947888	ImpA domain-containing protein	TssA
22	YpsIP31758_0328	382948..385170 [+], 2223	153950765	Rhs element Vgr protein	TssI
23	YpsIP31758_0329	385176..385634 [+], 459	153947100	hypothetical protein
24	YpsIP31758_0330	385627..389835 [+], 4209	153949971	RHS/YD repeat-containing protein	PAAR
25	YpsIP31758_0331	389845..390717 [+], 873	153950274	hypothetical protein
26	YpsIP31758_0332	391172..391342 [+], 171	153948437	hypothetical protein
27	YpsIP31758_0333	391335..395591 [+], 4257	153949101	RHS/YD repeat-containing protein	PAAR
28	YpsIP31758_0334	395591..396100 [+], 510	153947655	hypothetical protein
29	YpsIP31758_0335	396154..396507 [-], 354	153948253	hypothetical protein
30	YpsIP31758_0336	396504..396728 [-], 225	153950391	hypothetical protein
31	YpsIP31758_0337	396810..397217 [-], 408	153950714	DNA-binding protein
32	YpsIP31758_0338	397380..397556 [+], 177	153949417	hypothetical protein
33	YpsIP31758_0339	397578..399776 [+], 2199	153949195	VgrG protein	TssI
34	YpsIP31758_0340	399779..400201 [+], 423	153950721	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

ECA2866

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YpsIP31758_0312	361901..362419 [-], 519	153948422	hypothetical protein	ECA2866

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Proteins Genes

N/A