SecReT6
I. Summary
SecReT6 ID220 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009708
Location361901..399776
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111221111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPSIP31758_RS02905357165..357392 [+], 228756143920hypothetical protein 
2YPSIP31758_RS02910 (malK)357396..358505 [+], 1110488140883maltose/maltodextrin ABC transporter ATP-binding protein MalK 
3YPSIP31758_RS02915358576..359847 [+], 1272488140884maltoporin 
4YPSIP31758_RS02920 (malM)360088..360999 [+], 912501052764maltose operon protein MalM 
5YPSIP31758_RS02925361471..361749 [+], 279499506564hypothetical protein 
6YPSIP31758_RS02930361901..362419 [-], 519488140889Hcp family type VI secretion system effector 
7YPSIP31758_RS02935 (tssB)362943..363440 [+], 498488140890type VI secretion system contractile sheath small subunit 
8YPSIP31758_RS02940 (tssC)363508..364989 [+], 1482488159408type VI secretion system contractile sheath large subunit 
9YPSIP31758_RS02945 (tssE)364996..365436 [+], 441488140892type VI secretion system baseplate subunit TssE 
10YPSIP31758_RS02950 (tssF)365436..367256 [+], 1821499506561type VI secretion system baseplate subunit TssF 
11YPSIP31758_RS02955 (tssG)367220..368308 [+], 1089752489700type VI secretion system baseplate subunit TssG 
12YPSIP31758_RS02960 (tagH)368434..369750 [+], 1317499506560type VI secretion system-associated FHA domain protein TagH 
13YPSIP31758_RS02965 (tssJ)369750..370295 [+], 546501052767type VI secretion system lipoprotein TssJ 
14YPSIP31758_RS02970 (tssK)370298..371644 [+], 1347488140897type VI secretion system baseplate subunit TssK 
15YPSIP31758_RS02975371644..372411 [+], 768488140898type IVB secretion system protein IcmH/DotU 
16YPSIP31758_RS02980 (tssH)372422..375025 [+], 2604488140899type VI secretion system ATPase TssH 
17YPSIP31758_RS02985375022..375819 [+], 798488140900Fis family transcriptional regulator 
18YPSIP31758_RS02990 (tagO)375816..376502 [+], 687488140901type VI secretion system-associated protein TagO 
19YPSIP31758_RS02995 (tssA)376508..377896 [+], 1389488140902type VI secretion system protein TssA 
20YPSIP31758_RS03000 (tssM)377928..381461 [+], 3534501052768type VI secretion system membrane subunit TssM 
21YPSIP31758_RS24540381613..382926 [+], 1314499506557type VI secretion system ImpA family N-terminal domain-containing protein 
22YPSIP31758_RS03010382948..385170 [+], 2223501052769type VI secretion system tip protein VgrG 
23YPSIP31758_RS03015385176..385634 [+], 459488142175DcrB-related protein 
24YPSIP31758_RS03020385627..389499 [+], 3873pseudogenePAAR/RHS domain-containing protein 
25YPSIP31758_RS03025389845..390717 [+], 873501052771hypothetical protein 
26YPSIP31758_RS22735391169..391342 [+], 174pseudogeneDcrB-related protein 
27YPSIP31758_RS03035391335..395204 [+], 3870pseudogenePAAR/RHS domain-containing protein 
28YPSIP31758_RS03040395591..396100 [+], 510501052774hypothetical protein 
29YPSIP31758_RS22740396154..396507 [-], 354501052775type I toxin-antitoxin system SymE family toxin 
30YPSIP31758_RS03050396504..396728 [-], 225488142658type I toxin-antitoxin system SymE family toxin 
31YPSIP31758_RS03055396810..397217 [-], 408501052776helix-turn-helix transcriptional regulator 
32YPSIP31758_RS22745397311..397556 [+], 246pseudogenehypothetical protein 
33YPSIP31758_RS03065397578..399776 [+], 2199501052777type VI secretion system tip protein VgrG 
34YPSIP31758_RS03070399779..400201 [+], 423488142653DcrB-related protein 
35YPSIP31758_RS03075400246..404412 [+], 4167pseudogenePAAR/RHS domain-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU