 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPSIP31758_RS02905 | 357165..357392 [+], 228 | 756143920 | hypothetical protein | |
2 | YPSIP31758_RS02910 (malK) | 357396..358505 [+], 1110 | 488140883 | maltose/maltodextrin ABC transporter ATP-binding protein MalK | |
3 | YPSIP31758_RS02915 | 358576..359847 [+], 1272 | 488140884 | maltoporin | |
4 | YPSIP31758_RS02920 (malM) | 360088..360999 [+], 912 | 501052764 | maltose operon protein MalM | |
5 | YPSIP31758_RS02925 | 361471..361749 [+], 279 | 499506564 | hypothetical protein | |
6 | YPSIP31758_RS02930 | 361901..362419 [-], 519 | 488140889 | Hcp family type VI secretion system effector | |
7 | YPSIP31758_RS02935 (tssB) | 362943..363440 [+], 498 | 488140890 | type VI secretion system contractile sheath small subunit | |
8 | YPSIP31758_RS02940 (tssC) | 363508..364989 [+], 1482 | 488159408 | type VI secretion system contractile sheath large subunit | |
9 | YPSIP31758_RS02945 (tssE) | 364996..365436 [+], 441 | 488140892 | type VI secretion system baseplate subunit TssE | |
10 | YPSIP31758_RS02950 (tssF) | 365436..367256 [+], 1821 | 499506561 | type VI secretion system baseplate subunit TssF | |
11 | YPSIP31758_RS02955 (tssG) | 367220..368308 [+], 1089 | 752489700 | type VI secretion system baseplate subunit TssG | |
12 | YPSIP31758_RS02960 (tagH) | 368434..369750 [+], 1317 | 499506560 | type VI secretion system-associated FHA domain protein TagH | |
13 | YPSIP31758_RS02965 (tssJ) | 369750..370295 [+], 546 | 501052767 | type VI secretion system lipoprotein TssJ | |
14 | YPSIP31758_RS02970 (tssK) | 370298..371644 [+], 1347 | 488140897 | type VI secretion system baseplate subunit TssK | |
15 | YPSIP31758_RS02975 | 371644..372411 [+], 768 | 488140898 | type IVB secretion system protein IcmH/DotU | |
16 | YPSIP31758_RS02980 (tssH) | 372422..375025 [+], 2604 | 488140899 | type VI secretion system ATPase TssH | |
17 | YPSIP31758_RS02985 | 375022..375819 [+], 798 | 488140900 | Fis family transcriptional regulator | |
18 | YPSIP31758_RS02990 (tagO) | 375816..376502 [+], 687 | 488140901 | type VI secretion system-associated protein TagO | |
19 | YPSIP31758_RS02995 (tssA) | 376508..377896 [+], 1389 | 488140902 | type VI secretion system protein TssA | |
20 | YPSIP31758_RS03000 (tssM) | 377928..381461 [+], 3534 | 501052768 | type VI secretion system membrane subunit TssM | |
21 | YPSIP31758_RS24540 | 381613..382926 [+], 1314 | 499506557 | type VI secretion system ImpA family N-terminal domain-containing protein | |
22 | YPSIP31758_RS03010 | 382948..385170 [+], 2223 | 501052769 | type VI secretion system tip protein VgrG | |
23 | YPSIP31758_RS03015 | 385176..385634 [+], 459 | 488142175 | DcrB-related protein | |
24 | YPSIP31758_RS03020 | 385627..389499 [+], 3873 | pseudogene | PAAR/RHS domain-containing protein | |
25 | YPSIP31758_RS03025 | 389845..390717 [+], 873 | 501052771 | hypothetical protein | |
26 | YPSIP31758_RS22735 | 391169..391342 [+], 174 | pseudogene | DcrB-related protein | |
27 | YPSIP31758_RS03035 | 391335..395204 [+], 3870 | pseudogene | PAAR/RHS domain-containing protein | |
28 | YPSIP31758_RS03040 | 395591..396100 [+], 510 | 501052774 | hypothetical protein | |
29 | YPSIP31758_RS22740 | 396154..396507 [-], 354 | 501052775 | type I toxin-antitoxin system SymE family toxin | |
30 | YPSIP31758_RS03050 | 396504..396728 [-], 225 | 488142658 | type I toxin-antitoxin system SymE family toxin | |
31 | YPSIP31758_RS03055 | 396810..397217 [-], 408 | 501052776 | helix-turn-helix transcriptional regulator | |
32 | YPSIP31758_RS22745 | 397311..397556 [+], 246 | pseudogene | hypothetical protein | |
33 | YPSIP31758_RS03065 | 397578..399776 [+], 2199 | 501052777 | type VI secretion system tip protein VgrG | |
34 | YPSIP31758_RS03070 | 399779..400201 [+], 423 | 488142653 | DcrB-related protein | |
35 | YPSIP31758_RS03075 | 400246..404412 [+], 4167 | pseudogene | PAAR/RHS domain-containing protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein