SecReT6
I. Summary
SecReT6 ID221 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009708
Location887643..899301
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpsIP31758_0721883884..884534 [+], 651153948559CAAX amino terminal protease family protein 
2YpsIP31758_0722884659..884784 [-], 126153947317hypothetical protein 
3YpsIP31758_0723884985..885380 [+], 396153947380lipoprotein 
4YpsIP31758_0724885448..885711 [+], 264153950170IS1, transposase orfA 
5YpsIP31758_0725886255..886383 [-], 129153949175hypothetical protein 
6YpsIP31758_0726887643..888143 [+], 501153947373hypothetical protein  TssB
7YpsIP31758_0727888186..889736 [+], 1551153947791hypothetical protein  TssC
8YpsIP31758_0728889748..891100 [+], 1353153950460hypothetical protein  TssK
9YpsIP31758_0729891097..891783 [+], 687153946881hypothetical protein  TssL
10YpsIP31758_0730891783..893519 [+], 1737153946939OmpA domain-containing protein  TagL
11YpsIP31758_0731893523..894014 [+], 492153950470hypothetical protein  TssD
12YpsIP31758_0732 (clpV1)894308..896956 [+], 2649153947751type VI secretion ATPase  TssH
13YpsIP31758_0733896953..899301 [+], 2349153947279type VI secretion system family protein  TssI
14YpsIP31758_0734899316..901538 [+], 2223153949178M23 peptidase domain-containing protein 
15YpsIP31758_0735902342..902617 [+], 276153946897IS1 family transposase orfA 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpsIP31758_0731893523..894014 [+], 492153950470hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A