SecReT6
I. Summary
SecReT6 ID221 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009708
Location887643..899301
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPSIP31758_RS04970883884..884534 [+], 651488144694CPBP family intramembrane metalloprotease 
2YPSIP31758_RS04975884985..885380 [+], 396501053001hypothetical protein 
3YPSIP31758_RS04980885448..885789 [+], 342pseudogeneIS1 family transposase 
4YPSIP31758_RS24285886282..886437 [+], 156501260615hypothetical protein 
5YPSIP31758_RS04995 (tssB)887643..888143 [+], 501488140454type VI secretion system contractile sheath small subunit  TssB
6YPSIP31758_RS05000 (tssC)888186..889736 [+], 1551501053003type VI secretion system contractile sheath large subunit  TssC
7YPSIP31758_RS05005 (tssK)889748..891100 [+], 1353501053004type VI secretion system baseplate subunit TssK  TssK
8YPSIP31758_RS05010891097..891783 [+], 687501053005type VI secretion system protein TssL, short form  TssL
9YPSIP31758_RS05015891783..893519 [+], 1737501053006OmpA family protein  TagL
10YPSIP31758_RS05020893523..894014 [+], 492488138806Hcp family type VI secretion system effector  TssD
11YPSIP31758_RS05025 (tssH)894308..896956 [+], 2649501053007type VI secretion system ATPase TssH  TssH
12YPSIP31758_RS05030896953..899301 [+], 2349501053008type VI secretion system tip protein VgrG  TssI
13YPSIP31758_RS05035899316..901538 [+], 2223501053009hydroxyethylthiazole kinase 
14YPSIP31758_RS05040901539..902021 [+], 483939331746hypothetical protein 
15YPSIP31758_RS05045902119..902313 [+], 195488144902hypothetical protein 
16YPSIP31758_RS23955902342..903038 [+], 697pseudogeneIS1 family transposase 
17YPSIP31758_RS05060903102..903302 [+], 2011716967253hypothetical protein 
18YPSIP31758_RS05065903648..904283 [+], 636pseudogeneDUF2345 domain-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A