SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	222
Strain	Yersinia pseudotuberculosis IP 31758
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_009708
Location	932854..967215
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	2	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YpsIP31758_0772	928475..929359 [+], 885	153946885	RepB plasmid partitioning protein
2	YpsIP31758_0773	929753..929992 [-], 240	153947062	hypothetical protein
3	YpsIP31758_0774	930649..930918 [-], 270	153947520	hypothetical protein
4	YpsIP31758_0776	931614..931871 [-], 258	153948405	PerC family transcriptional regulator
5	YpsIP31758_0777	932854..933354 [+], 501	153947945	hypothetical protein	TssB
6	YpsIP31758_0778	933399..934952 [+], 1554	153949766	hypothetical protein	TssC
7	YpsIP31758_0779	935078..936430 [+], 1353	153949312	hypothetical protein	TssK
8	YpsIP31758_0780	936427..937113 [+], 687	153946938	hypothetical protein	TssL
9	YpsIP31758_0781	937113..938834 [+], 1722	153950607	OmpA domain-containing protein	TagL
10	YpsIP31758_0782	938848..939339 [+], 492	153950535	hypothetical protein	TssD
11	YpsIP31758_0783	939402..939530 [-], 129	153947741	hypothetical protein
12	YpsIP31758_0785	942531..945029 [+], 2499	153947539	Rhs element Vgr protein	TssI
13	YpsIP31758_0786	945147..946418 [+], 1272	153950629	hypothetical protein
14	YpsIP31758_0787	946425..946817 [+], 393	153950779	lipoprotein
15	YpsIP31758_0788	947132..949834 [+], 2703	153950285	Rhs element Vgr protein	TssI
16	YpsIP31758_0789	949837..950253 [+], 417	153949848	hypothetical protein
17	YpsIP31758_0790	950262..951074 [+], 813	153949290	hypothetical protein
18	YpsIP31758_0791	951254..952009 [+], 756	153947574	hypothetical protein
19	YpsIP31758_0792	952014..952532 [+], 519	153947328	hypothetical protein
20	YpsIP31758_0793	953009..953152 [+], 144	153947085	hypothetical protein
21	YpsIP31758_0794	953312..954544 [+], 1233	153948425	hypothetical protein
22	YpsIP31758_0795	954541..957963 [+], 3423	153949709	hypothetical protein	TssM
23	YpsIP31758_0796	958005..959609 [+], 1605	153949179	ImpA domain-containing protein	TssA
24	YpsIP31758_0797	959627..960685 [+], 1059	153948159	PAAR domain-containing protein	PAAR
25	YpsIP31758_0798	960700..961155 [+], 456	153948096	hypothetical protein
26	YpsIP31758_0799	961183..961299 [+], 117	153949253	hypothetical protein
27	YpsIP31758_0800	961400..963163 [+], 1764	153950751	hypothetical protein	TssF
28	YpsIP31758_0801	963127..964212 [+], 1086	153950870	hypothetical protein	TssG
29	YpsIP31758_0802	964187..964768 [+], 582	153950286	hypothetical protein	TssJ
30	YpsIP31758_0803	964768..965217 [+], 450	153950743	hypothetical protein	TssE
31	YpsIP31758_0804	965335..965463 [-], 129	153946855	hypothetical protein
32	YpsIP31758_0805	965818..967215 [+], 1398	153950380	ImpA domain-containing protein	TssA
33	YpsIP31758_0806	967310..967942 [+], 633	153948017	hypothetical protein
34	YpsIP31758_0807	968006..969856 [+], 1851	153948461	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YpsIP31758_0782	938848..939339 [+], 492	153950535	hypothetical protein	EC042_4529

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Proteins Genes

N/A