SecReT6
I. Summary
SecReT6 ID222 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009708
Location932854..967215
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011221111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPSIP31758_RS05225928475..929359 [+], 885501053042ParB N-terminal domain-containing protein 
2YPSIP31758_RS24560929701..929950 [-], 250pseudogenehypothetical protein 
3YPSIP31758_RS05235930649..931306 [-], 658pseudogeneDUF533 domain-containing protein 
4YPSIP31758_RS05240931614..931844 [-], 231752489825PerC family transcriptional regulator 
5YPSIP31758_RS05245 (tssB)932854..933354 [+], 501501053046type VI secretion system contractile sheath small subunit 
6YPSIP31758_RS05250 (tssC)933399..934952 [+], 1554501053047type VI secretion system contractile sheath large subunit 
7YPSIP31758_RS05255 (tssK)935078..936430 [+], 1353501053048type VI secretion system baseplate subunit TssK 
8YPSIP31758_RS05260936427..937113 [+], 687501053049type VI secretion system protein TssL, short form 
9YPSIP31758_RS05265937113..938834 [+], 1722501053050OmpA family protein 
10YPSIP31758_RS05270938848..939339 [+], 492491016277Hcp family type VI secretion system effector 
11YPSIP31758_RS05275 (tssH)939886..942534 [+], 2649pseudogenetype VI secretion system ATPase TssH 
12YPSIP31758_RS05280942531..945029 [+], 2499501053053type VI secretion system tip protein VgrG 
13YPSIP31758_RS05285945147..946418 [+], 1272501053054hypothetical protein 
14YPSIP31758_RS05290946422..946817 [+], 396694126552hypothetical protein 
15YPSIP31758_RS05295947132..949834 [+], 2703501053055type VI secretion system tip protein VgrG 
16YPSIP31758_RS05300949837..950253 [+], 417499505444DUF4431 domain-containing protein 
17YPSIP31758_RS05305950262..952009 [+], 1748pseudogeneTIGR02594 family protein 
18YPSIP31758_RS05310952014..952532 [+], 519501053058hypothetical protein 
19YPSIP31758_RS05315953312..954544 [+], 1233501053060hypothetical protein 
20YPSIP31758_RS05320954541..957963 [+], 3423501053061type VI secretion system membrane subunit 
21YPSIP31758_RS05325 (tssA)958005..959609 [+], 1605501053062type VI secretion system protein TssA 
22YPSIP31758_RS05330959627..960685 [+], 1059501053063PAAR domain-containing protein 
23YPSIP31758_RS05335960700..961155 [+], 456488140731hypothetical protein 
24YPSIP31758_RS05340 (tssF)961400..963163 [+], 1764501053065type VI secretion system baseplate subunit TssF 
25YPSIP31758_RS05345 (tssG)963127..964212 [+], 1086501053066type VI secretion system baseplate subunit TssG 
26YPSIP31758_RS05350 (tssJ)964187..964768 [+], 582501053067type VI secretion system lipoprotein TssJ 
27YPSIP31758_RS05355 (tssE)964768..965217 [+], 450501053068type VI secretion system baseplate subunit TssE 
28YPSIP31758_RS24290965286..965702 [+], 417908574035DUF1283 domain-containing protein 
29YPSIP31758_RS05365965818..967215 [+], 1398501053070type VI secretion system ImpA family N-terminal domain-containing protein 
30YPSIP31758_RS05370967349..967942 [+], 5941430330433hypothetical protein 
31YPSIP31758_RS05375968006..969856 [+], 1851501053072NERD domain-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A