 |
| III. genome coordinates of the T6SS gene cluster |
| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
| 1 | YPSIP31758_RS05225 | 928475..929359 [+], 885 | 501053042 | ParB N-terminal domain-containing protein | |
| 2 | YPSIP31758_RS24560 | 929701..929950 [-], 250 | pseudogene | hypothetical protein | |
| 3 | YPSIP31758_RS05235 | 930649..931306 [-], 658 | pseudogene | DUF533 domain-containing protein | |
| 4 | YPSIP31758_RS05240 | 931614..931844 [-], 231 | 752489825 | PerC family transcriptional regulator | |
| 5 | YPSIP31758_RS05245 (tssB) | 932854..933354 [+], 501 | 501053046 | type VI secretion system contractile sheath small subunit | |
| 6 | YPSIP31758_RS05250 (tssC) | 933399..934952 [+], 1554 | 501053047 | type VI secretion system contractile sheath large subunit | |
| 7 | YPSIP31758_RS05255 (tssK) | 935078..936430 [+], 1353 | 501053048 | type VI secretion system baseplate subunit TssK | |
| 8 | YPSIP31758_RS05260 | 936427..937113 [+], 687 | 501053049 | type VI secretion system protein TssL, short form | |
| 9 | YPSIP31758_RS05265 | 937113..938834 [+], 1722 | 501053050 | OmpA family protein | |
| 10 | YPSIP31758_RS05270 | 938848..939339 [+], 492 | 491016277 | Hcp family type VI secretion system effector | |
| 11 | YPSIP31758_RS05275 (tssH) | 939886..942534 [+], 2649 | pseudogene | type VI secretion system ATPase TssH | |
| 12 | YPSIP31758_RS05280 | 942531..945029 [+], 2499 | 501053053 | type VI secretion system tip protein VgrG | |
| 13 | YPSIP31758_RS05285 | 945147..946418 [+], 1272 | 501053054 | hypothetical protein | |
| 14 | YPSIP31758_RS05290 | 946422..946817 [+], 396 | 694126552 | hypothetical protein | |
| 15 | YPSIP31758_RS05295 | 947132..949834 [+], 2703 | 501053055 | type VI secretion system tip protein VgrG | |
| 16 | YPSIP31758_RS05300 | 949837..950253 [+], 417 | 499505444 | DUF4431 domain-containing protein | |
| 17 | YPSIP31758_RS05305 | 950262..952009 [+], 1748 | pseudogene | TIGR02594 family protein | |
| 18 | YPSIP31758_RS05310 | 952014..952532 [+], 519 | 501053058 | hypothetical protein | |
| 19 | YPSIP31758_RS05315 | 953312..954544 [+], 1233 | 501053060 | hypothetical protein | |
| 20 | YPSIP31758_RS05320 | 954541..957963 [+], 3423 | 501053061 | type VI secretion system membrane subunit | |
| 21 | YPSIP31758_RS05325 (tssA) | 958005..959609 [+], 1605 | 501053062 | type VI secretion system protein TssA | |
| 22 | YPSIP31758_RS05330 | 959627..960685 [+], 1059 | 501053063 | PAAR domain-containing protein | |
| 23 | YPSIP31758_RS05335 | 960700..961155 [+], 456 | 488140731 | hypothetical protein | |
| 24 | YPSIP31758_RS05340 (tssF) | 961400..963163 [+], 1764 | 501053065 | type VI secretion system baseplate subunit TssF | |
| 25 | YPSIP31758_RS05345 (tssG) | 963127..964212 [+], 1086 | 501053066 | type VI secretion system baseplate subunit TssG | |
| 26 | YPSIP31758_RS05350 (tssJ) | 964187..964768 [+], 582 | 501053067 | type VI secretion system lipoprotein TssJ | |
| 27 | YPSIP31758_RS05355 (tssE) | 964768..965217 [+], 450 | 501053068 | type VI secretion system baseplate subunit TssE | |
| 28 | YPSIP31758_RS24290 | 965286..965702 [+], 417 | 908574035 | DUF1283 domain-containing protein | |
| 29 | YPSIP31758_RS05365 | 965818..967215 [+], 1398 | 501053070 | type VI secretion system ImpA family N-terminal domain-containing protein | |
| 30 | YPSIP31758_RS05370 | 967349..967942 [+], 594 | 1430330433 | hypothetical protein | |
| 31 | YPSIP31758_RS05375 | 968006..969856 [+], 1851 | 501053072 | NERD domain-containing protein | |
| |
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
SecReT6 ID
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein