I. Summary
SecReT6 ID223 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPSIP31758_RS08145 (mltB)1581625..1582719 [+], 1095499506079lytic murein transglycosylase B 
2YPSIP31758_RS081501583960..1584562 [+], 603499506078LuxR family transcriptional regulator 
3YPSIP31758_RS081551584935..1585417 [-], 483488144113DcrB-related protein 
4YPSIP31758_RS081601585414..1587096 [-], 1683501053298OmpA family protein 
5YPSIP31758_RS081651587097..1587798 [-], 702501053299hypothetical protein 
6YPSIP31758_RS081701587795..1589132 [-], 1338501053300glycosyl transferase 
7YPSIP31758_RS081751589172..1590203 [-], 1032499506074fimbrial protein 
8YPSIP31758_RS081801590210..1591403 [-], 1194499506073ImpA family type VI secretion system protein 
9YPSIP31758_RS08185 (tssG)1591502..1592527 [-], 1026499506072type VI secretion system baseplate subunit TssG 
10YPSIP31758_RS08190 (tssF)1592527..1594407 [-], 1881488140374type VI secretion system baseplate subunit TssF 
11YPSIP31758_RS08195 (tssH)1595191..1597848 [+], 2658501053301type VI secretion system ATPase TssH 
12YPSIP31758_RS082001598059..1598604 [+], 546501053302type 1 fimbrial protein 
13YPSIP31758_RS082051598761..1599522 [+], 762501053303fimbria/pilus periplasmic chaperone 
14YPSIP31758_RS230551599650..1602322 [+], 26731105270890fimbrial biogenesis outer membrane usher protein 
15YPSIP31758_RS082201602307..1602915 [+], 609499506068type 1 fimbrial protein 
16YPSIP31758_RS08225 (tssB)1603021..1603545 [+], 525488140367type VI secretion system contractile sheath small subunit 
17YPSIP31758_RS08230 (tssC)1603569..1605071 [+], 1503488140366type VI secretion system contractile sheath large subunit 
18YPSIP31758_RS082351605404..1605889 [+], 486488140365type VI secretion system tube protein Hcp 
19YPSIP31758_RS08240 (tssJ)1606163..1606702 [+], 540488140364type VI secretion system lipoprotein TssJ 
20YPSIP31758_RS08245 (tssK)1606706..1608055 [+], 1350488140363type VI secretion system baseplate subunit TssK 
21YPSIP31758_RS08250 (tssL)1608052..1609428 [+], 1377501053305type VI secretion system protein TssL, long form 
22YPSIP31758_RS08255 (tssM)1609437..1613264 [+], 3828499506065type VI secretion system membrane subunit TssM 
23YPSIP31758_RS082601613591..1616341 [+], 2751501053306type VI secretion system tip protein VgrG 
24YPSIP31758_RS082651616440..1616700 [+], 261488138476PAAR domain-containing protein 
25YPSIP31758_RS082701616706..1617548 [+], 843488283329TagK domain-containing protein 
26YPSIP31758_RS082751617568..1618374 [+], 807501053307ImpE family protein 
27YPSIP31758_RS082801618438..1618917 [+], 480488138478type VI secretion system baseplate subunit TssE 
28YPSIP31758_RS082851618942..1619289 [+], 348488138479hypothetical protein 
29YPSIP31758_RS082901619364..1619705 [-], 342488138480alkylphosphonate utilization protein 
30YPSIP31758_RS082951620081..1622120 [-], 2040501382250DUF2207 domain-containing protein 
31YPSIP31758_RS083001622125..1622667 [-], 543501053309LemA family protein 
32YPSIP31758_RS230601623271..1623636 [+], 366pseudogenetyrosine-type recombinase/integrase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes