I. Summary
SecReT6 ID224 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPSIP31758_RS13705 (moeB)2803334..2804104 [+], 771488140740molybdopterin-synthase adenylyltransferase MoeB 
2YPSIP31758_RS137102804176..2804823 [-], 648501053800hypothetical protein 
3YPSIP31758_RS137152805041..2806636 [-], 1596501053801ABC-F family ATPase 
4YPSIP31758_RS137202807319..2807942 [+], 624501053802hypothetical protein 
5YPSIP31758_RS137252808154..2809521 [-], 1368501053803type VI secretion system ImpA family N-terminal domain-containing protein 
6YPSIP31758_RS13730 (tssE)2809545..2809997 [-], 453488140735type VI secretion system baseplate subunit TssE 
7YPSIP31758_RS13735 (tssJ)2809997..2810578 [-], 582501053804type VI secretion system lipoprotein TssJ 
8YPSIP31758_RS13740 (tssG)2810553..2811638 [-], 1086501053805type VI secretion system baseplate subunit TssG 
9YPSIP31758_RS13745 (tssF)2811602..2813365 [-], 1764501053806type VI secretion system baseplate subunit TssF 
10YPSIP31758_RS137502813457..2813915 [-], 459501053808DUF943 family protein 
11YPSIP31758_RS137552813918..2815033 [-], 1116501053809DUF3289 family protein 
12YPSIP31758_RS13760 (tssA)2815051..2816652 [-], 1602501053810type VI secretion system protein TssA 
13YPSIP31758_RS137652816697..2817482 [-], 786908574201hypothetical protein 
14YPSIP31758_RS137702817531..2820572 [-], 3042501053812hypothetical protein 
15YPSIP31758_RS137752820654..2824076 [-], 3423501053813type VI secretion system membrane subunit 
16YPSIP31758_RS137802824073..2825305 [-], 1233501053814hypothetical protein 
17YPSIP31758_RS233602826135..2826930 [+], 796pseudogenetransposase 
18YPSIP31758_RS137902827470..2828117 [-], 648727730705hypothetical protein 
19YPSIP31758_RS137952828114..2829738 [-], 1625pseudogeneM23 family metallopeptidase 
20YPSIP31758_RS138002829754..2830014 [-], 261501053818DUF2345 domain-containing protein 
21YPSIP31758_RS138052830168..2830941 [-], 774488140722hypothetical protein 
22YPSIP31758_RS138102830938..2833238 [-], 2301501053819M23 family metallopeptidase 
23YPSIP31758_RS138152833254..2835602 [-], 2349501053820type VI secretion system tip protein VgrG 
24YPSIP31758_RS13820 (tssH)2835605..2838247 [-], 2643501053821type VI secretion system ATPase TssH 
25YPSIP31758_RS138252838541..2839032 [-], 492488138806Hcp family type VI secretion system effector 
26YPSIP31758_RS138302839036..2840772 [-], 1737501053822OmpA family protein 
27YPSIP31758_RS138352840772..2841458 [-], 687501053823type VI secretion system protein TssL, short form 
28YPSIP31758_RS13840 (tssK)2841455..2842807 [-], 1353488151639type VI secretion system baseplate subunit TssK 
29YPSIP31758_RS13845 (tssC)2842819..2844369 [-], 1551501053003type VI secretion system contractile sheath large subunit 
30YPSIP31758_RS13850 (tssB)2844412..2844912 [-], 501488140454type VI secretion system contractile sheath small subunit 
31YPSIP31758_RS138602845901..2846749 [-], 849488141808ACP S-malonyltransferase 
32YPSIP31758_RS138652846848..2847096 [-], 249488141809acyl carrier protein 
33YPSIP31758_RS138702847134..2847574 [-], 441488157362lipocalin-like domain-containing protein 
34YPSIP31758_RS138752847661..2848449 [-], 789501053824SDR family oxidoreductase 
35YPSIP31758_RS138802848452..2849204 [-], 753488141817enoyl-CoA hydratase/isomerase family protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes