 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPSIP31758_RS18425 (rapA) | 3847096..3850002 [+], 2907 | 499505079 | RNA polymerase-associated protein RapA | |
2 | YPSIP31758_RS18430 | 3850258..3850611 [-], 354 | 488139260 | hypothetical protein | |
3 | YPSIP31758_RS18435 (tssM) | 3850633..3854074 [-], 3442 | pseudogene | type VI secretion system membrane subunit TssM | |
4 | YPSIP31758_RS18440 | 3854136..3855746 [-], 1611 | 499505078 | type IVB secretion system protein IcmH/DotU | |
5 | YPSIP31758_RS18445 (tssK) | 3855743..3857098 [-], 1356 | 488139262 | type VI secretion system baseplate subunit TssK | |
6 | YPSIP31758_RS18450 (tssJ) | 3857218..3857709 [-], 492 | 499505077 | type VI secretion system lipoprotein TssJ | |
7 | YPSIP31758_RS18455 | 3857702..3858067 [-], 366 | 488143529 | DUF4150 domain-containing protein | |
8 | YPSIP31758_RS18460 | 3858073..3858690 [-], 618 | 488139265 | DUF3540 domain-containing protein | |
9 | YPSIP31758_RS18465 | 3858683..3859786 [-], 1104 | 488143531 | pentapeptide repeat-containing protein | |
10 | YPSIP31758_RS18470 | 3859812..3862031 [-], 2220 | 488152879 | pentapeptide repeat-containing protein | |
11 | YPSIP31758_RS18475 (vgrG) | 3862044..3864392 [-], 2349 | 501054164 | type VI secretion system tip protein VgrG | |
12 | YPSIP31758_RS18480 (tssH) | 3864496..3867084 [-], 2589 | 488139267 | type VI secretion system ATPase TssH | |
13 | YPSIP31758_RS18485 (tssG) | 3867102..3868085 [-], 984 | 501054165 | type VI secretion system baseplate subunit TssG | |
14 | YPSIP31758_RS18490 (tssF) | 3868078..3869922 [-], 1845 | 499505074 | type VI secretion system baseplate subunit TssF | |
15 | YPSIP31758_RS18495 | 3869955..3870398 [-], 444 | 488139270 | type VI secretion system baseplate subunit TssE | |
16 | YPSIP31758_RS18500 | 3870472..3870990 [-], 519 | 488139271 | type VI secretion system tube protein Hcp | |
17 | YPSIP31758_RS18505 (tssC) | 3871153..3872655 [-], 1503 | 488139272 | type VI secretion system contractile sheath large subunit | |
18 | YPSIP31758_RS18510 (tssB) | 3872664..3873224 [-], 561 | 488139273 | type VI secretion system contractile sheath small subunit | |
19 | YPSIP31758_RS18515 | 3873235..3874248 [-], 1014 | 488139274 | ImpA family type VI secretion system protein | |
20 | YPSIP31758_RS18520 | 3874578..3875321 [+], 744 | 488143539 | hexameric transcriptional regulator RovC | |
21 | YPSIP31758_RS18525 (rluA) | 3876544..3877164 [+], 621 | 488139277 | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | |
22 | YPSIP31758_RS18530 (djlA) | 3877481..3878314 [-], 834 | 499505073 | co-chaperone DjlA | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein