I. Summary

SecReT6 ID	226
Strain	Cronobacter sakazakii ATCC BAA-894
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_009778
Location	1970175..1978958
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	1	0	1	1	0	2
Component	TssG	TssJ	TssK	TssM
Number	2	2	0	2

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ESA_02033	1965924..1966403 [-], 480	156934204	hypothetical protein
2	ESA_02034	1967100..1968098 [-], 999	156934205	hypothetical protein
3	ESA_02035	1968103..1969002 [-], 900	156934206	hypothetical protein
4	ESA_02036	1969450..1969905 [-], 456	156934207	hypothetical protein
5	ESA_02037	1970175..1972733 [-], 2559	156934208	hypothetical protein	TssI
6	ESA_02038	1972737..1973258 [-], 522	156934209	hypothetical protein	TssJ
7	ESA_02039	1973284..1974366 [-], 1083	156934210	hypothetical protein	TssG
8	ESA_02040	1974330..1976099 [-], 1770	156934211	hypothetical protein	TssF
9	ESA_02041	1976281..1977651 [-], 1371	156934212	hypothetical protein	TssM
10	ESA_02042	1977629..1978411 [-], 783	156934213	hypothetical protein	TssC
11	ESA_02043	1978446..1978958 [-], 513	156934214	hypothetical protein	TssB
12	ESA_02044	1979485..1979826 [-], 342	156934215	hypothetical protein
13	ESA_02045	1979867..1980427 [+], 561	156934216	hypothetical protein
14	ESA_02046	1980521..1982551 [-], 2031	156934217	choline transport protein BetT
15	ESA_02047	1982803..1983411 [+], 609	156934218	transcriptional regulator BetI

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Joseph S et al. (2012). Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One. 7(11):e49455. [PudMed:23166675]

(2) Franco AA et al. (2011). Characterization of putative virulence genes on the related RepFIB plasmids harbored by Cronobacter spp. Appl Environ Microbiol. 77(10):3255-67. [PudMed:21421789]

This literature contains experimental investigation

This literature contains bioinformatics investigation