SecReT6
I. Summary
SecReT6 ID228 insolico
StrainCronobacter sakazakii ATCC BAA-894
Repliconplasmid pESA3 [Browse all T6SS(s) in this replicon]
AccessionNC_009780
Location43387..69553
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121101100
ComponentTssGTssJTssKTssM
Number0110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ESA_pESA3p0547438640..39407 [-], 768156936593hypothetical protein 
2ESA_pESA3p0547539555..39848 [-], 294156936594hypothetical protein 
3ESA_pESA3p0547639966..40334 [+], 369156936595hypothetical protein 
4ESA_pESA3p0547739990..40247 [-], 258156936596hypothetical protein 
5ESA_pESA3p0547840484..42061 [+], 1578156936597hypothetical protein 
6ESA_pESA3p0547942144..42989 [-], 846156936598hypothetical protein 
7ESA_pESA3p0548043179..43424 [+], 246156936599hypothetical protein 
8ESA_pESA3p0548143387..43995 [+], 609156936600hypothetical protein  TssD
9ESA_pESA3p0548244014..44952 [+], 939156936601hypothetical protein 
10ESA_pESA3p0548345174..45500 [+], 327156936602hypothetical protein 
11ESA_pESA3p0548445722..47098 [+], 1377156936603hypothetical protein 
12ESA_pESA3p0548547151..47564 [-], 414156936604hypothetical protein 
13ESA_pESA3p0548647609..48892 [-], 1284156936605hypothetical protein 
14ESA_pESA3p0548748980..49315 [-], 336156936606hypothetical protein 
15ESA_pESA3p0548849405..50292 [-], 888156936607hypothetical protein 
16ESA_pESA3p0548950317..51222 [-], 906156936608hypothetical protein 
17ESA_pESA3p0549051287..52621 [+], 1335156936609hypothetical protein 
18ESA_pESA3p0549153314..53811 [+], 498156936610hypothetical protein  TssB
19ESA_pESA3p0549253846..55387 [+], 1542156936611hypothetical protein  TssC
20ESA_pESA3p0549355398..56738 [+], 1341156936612hypothetical protein  TssK
21ESA_pESA3p0549456735..57388 [+], 654156936613hypothetical protein  TssL
22ESA_pESA3p0549557392..59095 [+], 1704156936614hypothetical protein  TagL
23ESA_pESA3p0549659110..59601 [+], 492156936615hypothetical protein  TssD
24ESA_pESA3p0549759747..62413 [+], 2667156936616hypothetical protein  TssH
25ESA_pESA3p0549862579..62959 [+], 381156936617hypothetical protein 
26ESA_pESA3p0549963454..63639 [+], 186156936618hypothetical protein 
27ESA_pESA3p0550063673..66615 [+], 2943156936619hypothetical protein  TssI
28ESA_pESA3p0550266545..66670 [-], 126156936621hypothetical protein 
29ESA_pESA3p0550166612..67292 [+], 681156936620hypothetical protein 
30ESA_pESA3p0550367387..68034 [+], 648156936622hypothetical protein 
31ESA_pESA3p0550468104..68370 [+], 267156936623hypothetical protein  PAAR
32ESA_pESA3p0550568512..69198 [+], 687156936624hypothetical protein 
33ESA_pESA3p0550669230..69553 [+], 324156936625hypothetical protein  TssJ
34ESA_pESA3p0550769587..70336 [-], 750156936626hypothetical protein 
35ESA_pESA3p0550870333..72354 [-], 2022156936627hypothetical protein 
36ESA_pESA3p0550972401..72790 [-], 390156936628hypothetical protein 
37ESA_pESA3p0551072904..73233 [-], 330156936629hypothetical protein 
38ESA_pESA3p0551273420..73812 [-], 393156936631hypothetical protein 
39ESA_pESA3p0551173492..73881 [+], 390156936630hypothetical protein 
40ESA_pESA3p0551374005..74505 [+], 501156936632hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ESA_pESA3p0548143387..43995 [+], 609156936600hypothetical protein SMA2263
2ESA_pESA3p0549659110..59601 [+], 492156936615hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
N/A
(1) Joseph S et al. (2012). Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One. 7(11):e49455. [PudMed:23166675] in_silico
(2) Franco AA et al. (2011). Characterization of putative virulence genes on the related RepFIB plasmids harbored by Cronobacter spp. Appl Environ Microbiol. 77(10):3255-67. [PudMed:21421789] experimental in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation