I. Summary
SecReT6 ID230 insolico
StrainEscherichia coli HS
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EcHS_A0221236738..236887 [-], 150157159677hypothetical protein 
2EcHS_A0222236933..237718 [+], 786157159678lipoprotein 
3EcHS_A0223238344..239258 [-], 915157159679hypothetical protein 
4EcHS_A0224239302..239784 [-], 483157159680hypothetical protein  TssD
5EcHS_A0225239808..241160 [-], 1353157159681ImpA domain-containing protein  TssA
6EcHS_A0226241171..244695 [-], 3525157159682hypothetical protein  TssM
7EcHS_A0227244714..246126 [-], 1413157159683ImpA domain-containing protein  TssA
8EcHS_A0228246131..246874 [-], 744157159684type VI secretion-associated protein 
9EcHS_A0229 (clpV)246871..249642 [-], 2772157159685type VI secretion ATPase  TssH
10EcHS_A0230249651..250412 [-], 762157159686hypothetical protein  TssL
11EcHS_A0231250417..251748 [-], 1332157159687hypothetical protein  TssK
12EcHS_A0232251751..252275 [-], 525157159688type VI secretion lipoprotein  TssJ
13EcHS_A0233252272..253552 [-], 1281157159689hypothetical protein  Fha
14EcHS_A0234253577..254659 [-], 1083157159690hypothetical protein  TssG
15EcHS_A0235254623..256473 [-], 1851157159691hypothetical protein  TssF
16EcHS_A0236256477..256890 [-], 414157159692hypothetical protein  TssE
17EcHS_A0237256897..258372 [-], 1476157159693hypothetical protein  TssC
18EcHS_A0238258423..258647 [-], 225157159694hypothetical protein  TssC
19EcHS_A0239258682..259182 [-], 501157159695hypothetical protein  TssB
20EcHS_A0240259609..259752 [+], 144157159696hypothetical protein 
21EcHS_A0241259879..260397 [+], 519157159697hypothetical protein  TssD
22EcHS_A0242260430..260567 [+], 138157159698hypothetical protein 
23EcHS_A0243260607..262748 [+], 2142157159699type VI secretion system Vgr family protein  TssI
24EcHS_A0244 (rhsH)262824..267077 [+], 4254157159700protein RhsH  PAAR
25EcHS_A0245267089..267538 [+], 450157159701hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EcHS_A0241259879..260397 [+], 519157159697hypothetical protein ECA4275

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Proteins        Genes