I. Summary

SecReT6 ID	230
Strain	Escherichia coli HS
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_009800
Location	241171..262748
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	1	2	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	EcHS_A0221	236738..236887 [-], 150	157159677	hypothetical protein
2	EcHS_A0222	236933..237718 [+], 786	157159678	lipoprotein
3	EcHS_A0223	238344..239258 [-], 915	157159679	hypothetical protein
4	EcHS_A0224	239302..239784 [-], 483	157159680	hypothetical protein	TssD
5	EcHS_A0225	239808..241160 [-], 1353	157159681	ImpA domain-containing protein	TssA
6	EcHS_A0226	241171..244695 [-], 3525	157159682	hypothetical protein	TssM
7	EcHS_A0227	244714..246126 [-], 1413	157159683	ImpA domain-containing protein	TssA
8	EcHS_A0228	246131..246874 [-], 744	157159684	type VI secretion-associated protein
9	EcHS_A0229 (clpV)	246871..249642 [-], 2772	157159685	type VI secretion ATPase	TssH
10	EcHS_A0230	249651..250412 [-], 762	157159686	hypothetical protein	TssL
11	EcHS_A0231	250417..251748 [-], 1332	157159687	hypothetical protein	TssK
12	EcHS_A0232	251751..252275 [-], 525	157159688	type VI secretion lipoprotein	TssJ
13	EcHS_A0233	252272..253552 [-], 1281	157159689	hypothetical protein	Fha
14	EcHS_A0234	253577..254659 [-], 1083	157159690	hypothetical protein	TssG
15	EcHS_A0235	254623..256473 [-], 1851	157159691	hypothetical protein	TssF
16	EcHS_A0236	256477..256890 [-], 414	157159692	hypothetical protein	TssE
17	EcHS_A0237	256897..258372 [-], 1476	157159693	hypothetical protein	TssC
18	EcHS_A0238	258423..258647 [-], 225	157159694	hypothetical protein	TssC
19	EcHS_A0239	258682..259182 [-], 501	157159695	hypothetical protein	TssB
20	EcHS_A0240	259609..259752 [+], 144	157159696	hypothetical protein
21	EcHS_A0241	259879..260397 [+], 519	157159697	hypothetical protein	TssD
22	EcHS_A0242	260430..260567 [+], 138	157159698	hypothetical protein
23	EcHS_A0243	260607..262748 [+], 2142	157159699	type VI secretion system Vgr family protein	TssI
24	EcHS_A0244 (rhsH)	262824..267077 [+], 4254	157159700	protein RhsH	PAAR
25	EcHS_A0245	267089..267538 [+], 450	157159701	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ECA4275

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	EcHS_A0241	259879..260397 [+], 519	157159697	hypothetical protein	ECA4275

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Proteins        Genes

N/A

N/A