I. Summary
SecReT6 ID232 insolico
StrainEscherichia coli E24377A
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EcE24377A_3116 (csdA)3123414..3124619 [+], 1206157156888cysteine sulfinate desulfinase 
2EcE24377A_3117 (csdE)3124619..3125062 [+], 444157158642cysteine desulfuration protein CsdE 
3EcE24377A_31183125113..3125919 [-], 807157158275ThiF family protein 
4EcE24377A_3119 (mltA)3125996..3127093 [-], 1098157155153murein transglycosylase A 
5EcE24377A_31233128230..3128730 [+], 501157154801hypothetical protein  TssB
6EcE24377A_31243128789..3130327 [+], 1539157155143hypothetical protein  TssC
7EcE24377A_31253130345..3131682 [+], 1338157155664hypothetical protein  TssK
8EcE24377A_31263131679..3132344 [+], 666157156380DotU family type IV/VI secretion system protein  TssL
9EcE24377A_31273132357..3134009 [+], 1653157156833OmpA domain-containing protein  TagL
10EcE24377A_31283134067..3134558 [+], 492157157465hypothetical protein  TssD
11EcE24377A_31293134749..3137394 [+], 2646157155408ClpA/ClpB family protein  TssH
12EcE24377A_31303137406..3139913 [+], 2508157158477ImpA family type VI secretion-associated protein  TssI
13EcE24377A_31313139935..3140537 [+], 603157158177hypothetical protein 
14EcE24377A_31323140539..3141090 [+], 552157157411hypothetical protein 
15EcE24377A_31333141298..3141681 [+], 384157159449type VI secretion lipoprotein  TssJ
16EcE24377A_31343141685..3142113 [+], 429157158774hypothetical protein  TssE
17EcE24377A_31353142113..3143489 [+], 1377157156697ImpA-related N-terminal domain-containing protein  TssA
18EcE24377A_31363143554..3144102 [+], 549157158496hypothetical protein 
19EcE24377A_3137 (amiC)3144448..3145701 [-], 1254157157803N-acetylmuramoyl-L-alanine amidase 
20EcE24377A_3138 (argA)3145933..3147264 [+], 1332157156402N-acetylglutamate synthase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EcE24377A_31283134067..3134558 [+], 492157157465hypothetical protein EC042_4529

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Proteins        Genes