I. Summary

SecReT6 ID	233
Strain	Serratia proteamaculans 568
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_009832
Location	1958949..1988005
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Spro_1779	1954180..1954581 [-], 402	157370022	hypothetical protein
2	Spro_1780	1954913..1956346 [+], 1434	157370023	hypothetical protein
3	Spro_1781	1956779..1957375 [+], 597	157370024	hypothetical protein
4	Spro_1783	1958949..1959446 [+], 498	157370025	hypothetical protein	TssB
5	Spro_1784	1959481..1961028 [+], 1548	157370026	hypothetical protein	TssC
6	Spro_1785	1961045..1962385 [+], 1341	157370027	hypothetical protein	TssK
7	Spro_1786	1962382..1963071 [+], 690	157370028	hypothetical protein	TssL
8	Spro_1787	1963068..1964777 [+], 1710	157370029	OmpA/MotB domain-containing protein	TagL
9	Spro_1788	1964781..1965272 [+], 492	157370030	hypothetical protein	TssD
10	Spro_1789	1965445..1968099 [+], 2655	157370031	ATPase	TssH
11	Spro_1790	1968619..1970997 [+], 2379	157370032	Rhs element Vgr protein	TssI
12	Spro_1791	1971004..1971783 [+], 780	157370033	hypothetical protein
13	Spro_1792	1971895..1972428 [+], 534	157370034	hypothetical protein
14	Spro_1793	1972537..1973070 [+], 534	157370035	hypothetical protein
15	Spro_1794	1973179..1973691 [+], 513	157370036	hypothetical protein
16	Spro_1795	1973679..1976126 [+], 2448	157370037	hypothetical protein
17	Spro_1796	1976145..1976402 [+], 258	157370038	PAAR repeat-containing protein	PAAR
18	Spro_1797	1976576..1977538 [+], 963	157370039	hypothetical protein
19	Spro_1798	1977765..1980968 [+], 3204	157370040	ImcF domain-containing protein	TssM
20	Spro_1799	1980968..1982560 [+], 1593	157370041	ImpA domain-containing protein	TssA
21	Spro_1800	1982588..1984342 [+], 1755	157370042	hypothetical protein	TssF
22	Spro_1801	1984306..1985391 [+], 1086	157370043	hypothetical protein	TssG
23	Spro_1802	1985369..1985914 [+], 546	157370044	hypothetical protein	TssJ
24	Spro_1803	1985914..1986363 [+], 450	157370045	GPW/gp25 family protein	TssE
25	Spro_1804	1986614..1988005 [+], 1392	157370046	ImpA domain-containing protein	TssA
26	Spro_1805	1988172..1990166 [-], 1995	157370047	choline/carnitine/betaine transporter
27	Spro_1806	1990629..1990844 [+], 216	157370048	hypothetical protein
28	Spro_1807	1990952..1992361 [-], 1410	157370049	gluconate 2-dehydrogenase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	Spro_1788	1964781..1965272 [+], 492	157370030	hypothetical protein	EC042_4529

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Proteins        Genes

N/A

N/A