 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Daci_3833 | 4223498..4223905 [+], 408 | 160899267 | hypothetical protein | |
2 | Daci_3834 | 4223952..4225739 [-], 1788 | 160899268 | methyl-accepting chemotaxis sensory transducer | |
3 | Daci_3835 | 4225781..4226617 [-], 837 | 160899269 | hypothetical protein | |
4 | Daci_3836 | 4226841..4227779 [-], 939 | 160899270 | GntR family transcriptional regulator | |
5 | Daci_3837 | 4228393..4228875 [-], 483 | 160899271 | hypothetical protein | TssD |
6 | Daci_3838 | 4229490..4231553 [+], 2064 | 160899272 | serine/threonine protein kinase | |
7 | Daci_3839 | 4231563..4232351 [+], 789 | 160899273 | hypothetical protein | |
8 | Daci_3840 | 4232354..4232848 [+], 495 | 160899274 | hypothetical protein | |
9 | Daci_3841 | 4232891..4234936 [+], 2046 | 160899275 | FHA domain-containing protein | Fha |
10 | Daci_3842 | 4234933..4235721 [+], 789 | 160899276 | protein serine/threonine phosphatase | |
11 | Daci_3843 | 4235741..4236340 [+], 600 | 160899277 | putative lipoprotein | TssJ |
12 | Daci_3844 | 4236358..4237692 [+], 1335 | 160899278 | type VI secretion protein | TssK |
13 | Daci_3845 | 4237714..4239045 [+], 1332 | 160899279 | hypothetical protein | TssL |
14 | Daci_3846 | 4239050..4242706 [+], 3657 | 160899280 | type VI secretion protein IcmF | TssM |
15 | Daci_3847 | 4242688..4243392 [+], 705 | 160899281 | hypothetical protein | |
16 | Daci_3848 | 4243450..4244487 [+], 1038 | 160899282 | ImpA family type VI secretion-associated protein | TssA |
17 | Daci_3849 | 4244484..4244906 [+], 423 | 160899283 | hypothetical protein | |
18 | Daci_3850 | 4245030..4245572 [+], 543 | 160899284 | type VI secretion protein | TssB |
19 | Daci_3851 | 4245601..4247094 [+], 1494 | 160899285 | EvpB family type VI secretion protein | TssC |
20 | Daci_3852 | 4247099..4247596 [+], 498 | 160899286 | hypothetical protein | |
21 | Daci_3853 | 4247670..4248578 [+], 909 | 160899287 | hypothetical protein | |
22 | Daci_3854 | 4248655..4249026 [+], 372 | 160899288 | putative cytoplasmic protein | |
23 | Daci_3855 | 4249035..4249595 [+], 561 | 160899289 | hypothetical protein | |
24 | Daci_3856 | 4249644..4250453 [+], 810 | 160899290 | virulence protein SciE type | TagJ |
25 | Daci_3857 | 4250465..4250911 [+], 447 | 160899291 | hypothetical protein | |
26 | Daci_3858 | 4250923..4251477 [+], 555 | 160899292 | type VI secretion system lysozyme-like protein | TssE |
27 | Daci_3859 | 4251501..4253375 [+], 1875 | 160899293 | type VI secretion protein | TssF |
28 | Daci_3860 | 4253462..4254562 [+], 1101 | 160899294 | type VI secretion protein | TssG |
29 | Daci_3861 | 4254603..4255436 [+], 834 | 160899295 | hypothetical protein | |
30 | Daci_3862 | 4255472..4256077 [+], 606 | 160899296 | hypothetical protein | |
31 | Daci_3863 | 4256082..4256645 [+], 564 | 160899297 | hypothetical protein | |
32 | Daci_3864 | 4256651..4259437 [+], 2787 | 160899298 | type VI secretion ATPase | TssH |
33 | Daci_3865 | 4259434..4261725 [+], 2292 | 160899299 | peptidase S41 | |
34 | Daci_3866 | 4261762..4262721 [+], 960 | 160899300 | hypothetical protein | |
35 | Daci_3867 | 4262724..4263881 [+], 1158 | 160899301 | hypothetical protein | |
36 | Daci_3868 | 4263992..4266184 [+], 2193 | 160899302 | ImpA family type VI secretion-associated protein | TssI |
37 | Daci_3869 | 4266195..4267511 [+], 1317 | 160899303 | hypothetical protein | |
38 | Daci_3870 | 4267504..4267863 [+], 360 | 160899304 | hypothetical protein | PAAR |
39 | Daci_3871 | 4267870..4268868 [+], 999 | 160899305 | hypothetical protein | |
40 | Daci_3872 | 4268875..4269345 [+], 471 | 160899306 | hypothetical protein | |
41 | Daci_3873 | 4269359..4270423 [+], 1065 | 160899307 | hypothetical protein | |
42 | Daci_3874 | 4270598..4271143 [+], 546 | 160899308 | YD repeat-containing protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein