I. Summary

SecReT6 ID	236
Strain	Delftia acidovorans SPH-1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010002
Location	4228393..4266184
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Daci_3833	4223498..4223905 [+], 408	160899267	hypothetical protein
2	Daci_3834	4223952..4225739 [-], 1788	160899268	methyl-accepting chemotaxis sensory transducer
3	Daci_3835	4225781..4226617 [-], 837	160899269	hypothetical protein
4	Daci_3836	4226841..4227779 [-], 939	160899270	GntR family transcriptional regulator
5	Daci_3837	4228393..4228875 [-], 483	160899271	hypothetical protein	TssD
6	Daci_3838	4229490..4231553 [+], 2064	160899272	serine/threonine protein kinase
7	Daci_3839	4231563..4232351 [+], 789	160899273	hypothetical protein
8	Daci_3840	4232354..4232848 [+], 495	160899274	hypothetical protein
9	Daci_3841	4232891..4234936 [+], 2046	160899275	FHA domain-containing protein	Fha
10	Daci_3842	4234933..4235721 [+], 789	160899276	protein serine/threonine phosphatase
11	Daci_3843	4235741..4236340 [+], 600	160899277	putative lipoprotein	TssJ
12	Daci_3844	4236358..4237692 [+], 1335	160899278	type VI secretion protein	TssK
13	Daci_3845	4237714..4239045 [+], 1332	160899279	hypothetical protein	TssL
14	Daci_3846	4239050..4242706 [+], 3657	160899280	type VI secretion protein IcmF	TssM
15	Daci_3847	4242688..4243392 [+], 705	160899281	hypothetical protein
16	Daci_3848	4243450..4244487 [+], 1038	160899282	ImpA family type VI secretion-associated protein	TssA
17	Daci_3849	4244484..4244906 [+], 423	160899283	hypothetical protein
18	Daci_3850	4245030..4245572 [+], 543	160899284	type VI secretion protein	TssB
19	Daci_3851	4245601..4247094 [+], 1494	160899285	EvpB family type VI secretion protein	TssC
20	Daci_3852	4247099..4247596 [+], 498	160899286	hypothetical protein
21	Daci_3853	4247670..4248578 [+], 909	160899287	hypothetical protein
22	Daci_3854	4248655..4249026 [+], 372	160899288	putative cytoplasmic protein
23	Daci_3855	4249035..4249595 [+], 561	160899289	hypothetical protein
24	Daci_3856	4249644..4250453 [+], 810	160899290	virulence protein SciE type	TagJ
25	Daci_3857	4250465..4250911 [+], 447	160899291	hypothetical protein
26	Daci_3858	4250923..4251477 [+], 555	160899292	type VI secretion system lysozyme-like protein	TssE
27	Daci_3859	4251501..4253375 [+], 1875	160899293	type VI secretion protein	TssF
28	Daci_3860	4253462..4254562 [+], 1101	160899294	type VI secretion protein	TssG
29	Daci_3861	4254603..4255436 [+], 834	160899295	hypothetical protein
30	Daci_3862	4255472..4256077 [+], 606	160899296	hypothetical protein
31	Daci_3863	4256082..4256645 [+], 564	160899297	hypothetical protein
32	Daci_3864	4256651..4259437 [+], 2787	160899298	type VI secretion ATPase	TssH
33	Daci_3865	4259434..4261725 [+], 2292	160899299	peptidase S41
34	Daci_3866	4261762..4262721 [+], 960	160899300	hypothetical protein
35	Daci_3867	4262724..4263881 [+], 1158	160899301	hypothetical protein
36	Daci_3868	4263992..4266184 [+], 2193	160899302	ImpA family type VI secretion-associated protein	TssI
37	Daci_3869	4266195..4267511 [+], 1317	160899303	hypothetical protein
38	Daci_3870	4267504..4267863 [+], 360	160899304	hypothetical protein	PAAR
39	Daci_3871	4267870..4268868 [+], 999	160899305	hypothetical protein
40	Daci_3872	4268875..4269345 [+], 471	160899306	hypothetical protein
41	Daci_3873	4269359..4270423 [+], 1065	160899307	hypothetical protein
42	Daci_3874	4270598..4271143 [+], 546	160899308	YD repeat-containing protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

SMA2263

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	Daci_3837	4228393..4228875 [-], 483	160899271	hypothetical protein	SMA2263

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Proteins        Genes

N/A

N/A