I. Summary

SecReT6 ID	240
Strain	Burkholderia multivorans ATCC 17616
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_010086
Location	21845..39468
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	1	0	0	0	0	1
Component	TssG	TssJ	TssK	TssM
Number	0	0	0	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Bmul_3174	17632..18885 [+], 1254	161519723	squalene-associated FAD-dependent desaturase
2	Bmul_3175	18897..20870 [+], 1974	161519724	squalene-hopene cyclase
3	Bmul_3176	20876..21580 [+], 705	161519725	hypothetical protein
4	Bmul_3177	21845..23809 [+], 1965	161519726	type VI secretion protein	TssF
5	Bmul_3178	23880..29825 [+], 5946	161519727	ImpA family type VI secretion-associated protein	TssI
6	Bmul_3179	32441..32737 [+], 297	161519728	hypothetical protein
7	Bmul_3180	34280..34534 [+], 255	161519729	hypothetical protein	PAAR
8	Bmul_3181	34545..35486 [+], 942	161519730	hypothetical protein	TssL
9	Bmul_3182	35515..39468 [+], 3954	161519731	type VI secretion protein IcmF	TssM
10	Bmul_3183	39498..40511 [-], 1014	161519732	VacJ family lipoprotein
11	Bmul_3184	40504..43137 [-], 2634	161519733	hopanoid biosynthesis associated RND transporter like protein HpnN
12	Bmul_3185	43456..44052 [+], 597	161519734	toluene tolerance family protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A