I. Summary

SecReT6 ID	242
Strain	Yersinia pestis Angola
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010159
Location	176329..188105
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	0	1	1	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YpAngola_A0165	172469..172825 [-], 357	162421279	insertion sequence protein
2	YpAngola_A0166	172891..173013 [-], 123	162418799	IS1 family transposase orfA
3	YpAngola_A0167	173262..174029 [-], 768	162418301	hypothetical protein
4	YpAngola_A0168	174016..176313 [-], 2298	162420667	M23 peptidase domain-containing protein
5	YpAngola_A0169	176329..178677 [-], 2349	162420092	hypothetical protein	TssI
6	YpAngola_A0170	178674..181322 [-], 2649	162419253	AAA ATPase	TssH
7	YpAngola_A0171	181740..182231 [-], 492	162420621	hypothetical protein	TssD
8	YpAngola_A0173	183971..184657 [-], 687	162419888	hypothetical protein	TssL
9	YpAngola_A0174	184654..186006 [-], 1353	162418981	hypothetical protein	TssK
10	YpAngola_A0175	186018..187556 [-], 1539	162418479	hypothetical protein	TssC
11	YpAngola_A0176	187605..188105 [-], 501	162420130	hypothetical protein	TssB
12	YpAngola_A0177	189360..189488 [+], 129	162421599	hypothetical protein
13	YpAngola_A0178	190049..190312 [-], 264	162419987	IS1, transposase orfA
14	YpAngola_A0179	190380..190568 [-], 189	162420330	putative lipoprotein
15	YpAngola_A0180	190663..190794 [+], 132	162418820	hypothetical protein
16	YpAngola_A0181	191226..191648 [-], 423	162419238	CAAX amino terminal protease family protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YpAngola_A0171	181740..182231 [-], 492	162420621	hypothetical protein	EC042_4529

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Proteins        Genes

N/A

N/A