SecReT6
I. Summary
SecReT6 ID242 insolico
StrainYersinia pestis Angola
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010159
Location176329..188105
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpAngola_A0165172469..172825 [-], 357162421279insertion sequence protein 
2YpAngola_A0166172891..173013 [-], 123162418799IS1 family transposase orfA 
3YpAngola_A0167173262..174029 [-], 768162418301hypothetical protein 
4YpAngola_A0168174016..176313 [-], 2298162420667M23 peptidase domain-containing protein 
5YpAngola_A0169176329..178677 [-], 2349162420092hypothetical protein  TssI
6YpAngola_A0170178674..181322 [-], 2649162419253AAA ATPase  TssH
7YpAngola_A0171181740..182231 [-], 492162420621hypothetical protein  TssD
8YpAngola_A0173183971..184657 [-], 687162419888hypothetical protein  TssL
9YpAngola_A0174184654..186006 [-], 1353162418981hypothetical protein  TssK
10YpAngola_A0175186018..187556 [-], 1539162418479hypothetical protein  TssC
11YpAngola_A0176187605..188105 [-], 501162420130hypothetical protein  TssB
12YpAngola_A0177189360..189488 [+], 129162421599hypothetical protein 
13YpAngola_A0178190049..190312 [-], 264162419987IS1, transposase orfA 
14YpAngola_A0179190380..190568 [-], 189162420330putative lipoprotein 
15YpAngola_A0180190663..190794 [+], 132162418820hypothetical protein 
16YpAngola_A0181191226..191648 [-], 423162419238CAAX amino terminal protease family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpAngola_A0171181740..182231 [-], 492162420621hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A