I. Summary

SecReT6 ID	243
Strain	Yersinia pestis Angola
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010159
Location	772770..779916
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	0	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	0	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YpAngola_A0756	768888..769661 [+], 774	162420812	putative quinone oxidoreductase
2	YpAngola_A0758	772770..773753 [-], 984	162419255	hypothetical protein	TssG
3	YpAngola_A0759	773746..775590 [-], 1845	162421089	hypothetical protein	TssF
4	YpAngola_A0760	775623..776066 [-], 444	162421308	hypothetical protein	TssE
5	YpAngola_A0761	776140..776658 [-], 519	162420947	hypothetical protein	TssD
6	YpAngola_A0762	776821..778323 [-], 1503	162420443	hypothetical protein	TssC
7	YpAngola_A0763	778332..778892 [-], 561	162421023	hypothetical protein	TssB
8	YpAngola_A0764	778903..779916 [-], 1014	162421567	ImpA domain-containing protein	TssA
9	YpAngola_A0765	780246..780989 [+], 744	162418369	hypothetical protein
10	YpAngola_A0766	781313..781429 [+], 117	162418888	hypothetical protein
11	YpAngola_A0767 (rluA)	782213..782833 [+], 621	162419457	ribosomal large subunit pseudouridine synthase A
12	YpAngola_A0768 (djlA)	783131..783964 [-], 834	162419983	Dna-J like membrane chaperone protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

YPK_3563

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YpAngola_A0761	776140..776658 [-], 519	162420947	hypothetical protein	YPK_3563

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Proteins        Genes

N/A

N/A