SecReT6
I. Summary
SecReT6 ID243 insolico
StrainYersinia pestis Angola
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010159
Location772770..779916
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010011111
ComponentTssGTssJTssKTssM
Number1000
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpAngola_A0756768888..769661 [+], 774162420812putative quinone oxidoreductase 
2YpAngola_A0758772770..773753 [-], 984162419255hypothetical protein  TssG
3YpAngola_A0759773746..775590 [-], 1845162421089hypothetical protein  TssF
4YpAngola_A0760775623..776066 [-], 444162421308hypothetical protein  TssE
5YpAngola_A0761776140..776658 [-], 519162420947hypothetical protein  TssD
6YpAngola_A0762776821..778323 [-], 1503162420443hypothetical protein  TssC
7YpAngola_A0763778332..778892 [-], 561162421023hypothetical protein  TssB
8YpAngola_A0764778903..779916 [-], 1014162421567ImpA domain-containing protein  TssA
9YpAngola_A0765780246..780989 [+], 744162418369hypothetical protein 
10YpAngola_A0766781313..781429 [+], 117162418888hypothetical protein 
11YpAngola_A0767 (rluA)782213..782833 [+], 621162419457ribosomal large subunit pseudouridine synthase A 
12YpAngola_A0768 (djlA)783131..783964 [-], 834162419983Dna-J like membrane chaperone protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpAngola_A0761776140..776658 [-], 519162420947hypothetical protein YPK_3563

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Proteins        Genes
N/A
N/A