SecReT6
I. Summary
SecReT6 ID245 insolico
StrainYersinia pestis Angola
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010159
Location2820533..2832972
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100010001
ComponentTssGTssJTssKTssM
Number1000
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpAngola_A26912815868..2816263 [-], 396162418555outer membrane usher protein 
2YpAngola_A26922816333..2817541 [-], 1209162421021IS285 transposase 
3YpAngola_A26932817575..2818570 [-], 996162421462fimbrial usher protein 
4YpAngola_A26942818869..2819630 [-], 762162420226pili assembly chaperone 
5YpAngola_A26952819787..2820332 [-], 546162420627frimbrial protein 
6YpAngola_A2696 (clpV)2820533..2823208 [-], 2676162419365Clp ATPase  TssH
7YpAngola_A26972823991..2825871 [+], 1881162419873hypothetical protein  TssF
8YpAngola_A26982825871..2826896 [+], 1026162421796hypothetical protein  TssG
9YpAngola_A26992826995..2828176 [+], 1182162418406ImpA domain-containing protein  TssA
10YpAngola_A27002828204..2829214 [+], 1011162418873hypothetical protein 
11YpAngola_A27012829254..2830591 [+], 1338162418692hypothetical protein 
12YpAngola_A27022830588..2831289 [+], 702162421166hypothetical protein 
13YpAngola_A27032831290..2832972 [+], 1683162421467OmpA domain-containing protein  TagL
14YpAngola_A27042833056..2833451 [+], 396162420090hypothetical protein 
15YpAngola_A27052833809..2834411 [-], 603162420880LuxR family transcriptional regulator 
16YpAngola_A27062835332..2835472 [-], 141162419314hypothetical protein 
17YpAngola_A27072835557..2835679 [-], 123162419797hypothetical protein 
18YpAngola_A2708 (mltB)2835681..2836775 [-], 1095162421490murein hydrolase B 
19YpAngola_A27092836822..2836938 [+], 117162419786hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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