I. Summary

SecReT6 ID	246
Strain	Yersinia pestis Angola
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010159
Location	3013730..3019401
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	0	0	1	1	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	1	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YpAngola_A2865	3009518..3009646 [-], 129	162421377	hypothetical protein
2	YpAngola_A2866	3009740..3010279 [-], 540	162420572	hypothetical protein
3	YpAngola_A2867	3010300..3010437 [-], 138	162419186	hypothetical protein
4	YpAngola_A2868	3010609..3011817 [-], 1209	162419784	IS285 transposase
5	YpAngola_A2869	3011821..3013032 [+], 1212	162421627	outer membrane usher protein
6	YpAngola_A2870	3013017..3013625 [+], 609	162418895	fimbrial protein
7	YpAngola_A2871	3013730..3014254 [+], 525	162420033	hypothetical protein	TssB
8	YpAngola_A2872	3014278..3015780 [+], 1503	162421644	hypothetical protein	TssC
9	YpAngola_A2873	3016106..3016591 [+], 486	162419443	hypothetical protein	TssD
10	YpAngola_A2874	3016844..3017383 [+], 540	162420583	type VI secretion lipoprotein	TssJ
11	YpAngola_A2875	3017387..3018736 [+], 1350	162419779	hypothetical protein	TssK
12	YpAngola_A2876	3018796..3019401 [+], 606	162419436	DotU family type IV/VI secretion system protein	TssL
13	YpAngola_A2877	3019415..3020890 [+], 1476	162418899	transposase
14	YpAngola_A2878	3020900..3021436 [-], 537	162418489	insertion sequence transposase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ROD_27741

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YpAngola_A2873	3016106..3016591 [+], 486	162419443	hypothetical protein	ROD_27741

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Proteins        Genes

N/A

N/A