SecReT6
I. Summary
SecReT6 ID246 insolico
StrainYersinia pestis Angola
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010159
Location3013730..3019401
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011001100
ComponentTssGTssJTssKTssM
Number0110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpAngola_A28653009518..3009646 [-], 129162421377hypothetical protein 
2YpAngola_A28663009740..3010279 [-], 540162420572hypothetical protein 
3YpAngola_A28673010300..3010437 [-], 138162419186hypothetical protein 
4YpAngola_A28683010609..3011817 [-], 1209162419784IS285 transposase 
5YpAngola_A28693011821..3013032 [+], 1212162421627outer membrane usher protein 
6YpAngola_A28703013017..3013625 [+], 609162418895fimbrial protein 
7YpAngola_A28713013730..3014254 [+], 525162420033hypothetical protein  TssB
8YpAngola_A28723014278..3015780 [+], 1503162421644hypothetical protein  TssC
9YpAngola_A28733016106..3016591 [+], 486162419443hypothetical protein  TssD
10YpAngola_A28743016844..3017383 [+], 540162420583type VI secretion lipoprotein  TssJ
11YpAngola_A28753017387..3018736 [+], 1350162419779hypothetical protein  TssK
12YpAngola_A28763018796..3019401 [+], 606162419436DotU family type IV/VI secretion system protein  TssL
13YpAngola_A28773019415..3020890 [+], 1476162418899transposase 
14YpAngola_A28783020900..3021436 [-], 537162418489insertion sequence transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpAngola_A28733016106..3016591 [+], 486162419443hypothetical protein ROD_27741

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Proteins        Genes
N/A
N/A