I. Summary

SecReT6 ID	248
Strain	Sorangium cellulosum 'So ce 56'
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010162
Location	6996626..7022337
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	sce4976	6992587..6993144 [-], 558	162453252	hypothetical protein
2	sce4977 (queA2)	6993358..6994383 [-], 1026	162453253	S-adenosylmethionine--tRNA ribosyltransferase-isomerase
3	sce4978	6994380..6995192 [-], 813	162453254	oxidoreductase
4	sce4979	6995283..6995843 [+], 561	162453255	DNA-binding protein
5	sce4980	6995880..6996593 [-], 714	162453256	hypothetical protein
6	sce4981	6996626..6998110 [-], 1485	162453257	hypothetical protein	TssC
7	sce4982	6998114..6998605 [-], 492	162453258	hypothetical protein	TssB
8	sce4983	6998778..7000466 [-], 1689	162453259	hypothetical protein	TssA
9	sce4984	7000653..7001627 [-], 975	162453260	hypothetical protein
10	sce4985	7002168..7005884 [-], 3717	162453261	hypothetical protein	TssM
11	sce4986	7005926..7006603 [-], 678	162453262	hypothetical protein	TssL
12	sce4987	7006638..7007999 [-], 1362	162453263	hypothetical protein	TssK
13	sce4988	7008181..7008972 [-], 792	162453264	hypothetical protein	TssJ
14	sce4989 (clpA)	7009076..7011781 [-], 2706	162453265	endopeptidase Clp	TssH
15	sce4990 (mltD3)	7011818..7013689 [-], 1872	162453266	Slt family transglycosylase
16	sce4991	7013910..7015202 [+], 1293	162453267	FHA domain-containing protein	Fha
17	sce4992	7015293..7015985 [+], 693	162453268	hypothetical protein
18	sce4993	7016342..7017259 [-], 918	162453269	hypothetical protein
19	sce4994	7017795..7018307 [+], 513	162453270	hypothetical protein	TssD
20	sce4995	7018446..7018931 [+], 486	162453271	hypothetical protein	TssD
21	sce4996	7018978..7019397 [+], 420	162453272	hypothetical protein	TssE
22	sce4997	7019471..7021240 [+], 1770	162453273	hypothetical protein	TssF
23	sce4998	7021204..7022337 [+], 1134	162453274	hypothetical protein	TssG
24	sce4999	7022410..7023102 [-], 693	162453275	hypothetical protein
25	sce5000	7023428..7023973 [+], 546	162453276	hypothetical protein
26	sce5001	7024077..7025138 [+], 1062	162453277	hypothetical protein
27	sce5002	7025152..7026306 [-], 1155	162453278	FHA domain-containing protein	Fha

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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